Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0154 and EX28DRAFT_0155 are separated by 11 nucleotides EX28DRAFT_0155 and EX28DRAFT_0156 are separated by 9 nucleotides EX28DRAFT_0156 and EX28DRAFT_0157 overlap by 35 nucleotides
EX28DRAFT_0154: EX28DRAFT_0154 - Uncharacterized protein conserved in bacteria, at 100,584 to 102,488
_0154
EX28DRAFT_0155: EX28DRAFT_0155 - Sugar phosphate isomerases/epimerases, at 102,500 to 103,390
_0155
EX28DRAFT_0156: EX28DRAFT_0156 - Uncharacterized enzyme involved in inositol metabolism, at 103,400 to 104,224
_0156
EX28DRAFT_0157: EX28DRAFT_0157 - Arabinose efflux permease, at 104,190 to 105,404
_0157
Position (kb) 103
104
105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 102.444 kb on + strand at 102.444 kb on + strand at 102.444 kb on + strand at 102.444 kb on + strand at 102.445 kb on - strand at 102.445 kb on - strand at 102.513 kb on + strand at 102.707 kb on + strand, within EX28DRAFT_0155 at 102.893 kb on + strand, within EX28DRAFT_0155 at 102.925 kb on + strand, within EX28DRAFT_0155 at 103.126 kb on + strand, within EX28DRAFT_0155 at 103.126 kb on + strand, within EX28DRAFT_0155 at 103.207 kb on + strand, within EX28DRAFT_0155 at 103.272 kb on - strand, within EX28DRAFT_0155 at 103.346 kb on + strand at 103.347 kb on - strand at 103.348 kb on + strand at 103.349 kb on - strand at 103.349 kb on - strand at 103.388 kb on + strand at 103.389 kb on - strand at 103.413 kb on + strand at 103.664 kb on + strand, within EX28DRAFT_0156 at 103.665 kb on - strand, within EX28DRAFT_0156 at 103.749 kb on - strand, within EX28DRAFT_0156 at 103.817 kb on + strand, within EX28DRAFT_0156 at 103.949 kb on + strand, within EX28DRAFT_0156 at 103.964 kb on + strand, within EX28DRAFT_0156 at 103.964 kb on + strand, within EX28DRAFT_0156 at 103.965 kb on - strand, within EX28DRAFT_0156 at 103.965 kb on - strand, within EX28DRAFT_0156 at 103.967 kb on + strand, within EX28DRAFT_0156 at 103.967 kb on + strand, within EX28DRAFT_0156 at 103.967 kb on + strand, within EX28DRAFT_0156 at 103.968 kb on - strand, within EX28DRAFT_0156 at 103.968 kb on - strand, within EX28DRAFT_0156 at 104.041 kb on + strand, within EX28DRAFT_0156 at 104.042 kb on - strand, within EX28DRAFT_0156 at 104.051 kb on + strand, within EX28DRAFT_0156 at 104.052 kb on - strand, within EX28DRAFT_0156 at 104.120 kb on + strand, within EX28DRAFT_0156 at 104.124 kb on - strand, within EX28DRAFT_0156 at 104.124 kb on - strand, within EX28DRAFT_0156 at 104.308 kb on + strand at 104.309 kb on - strand at 104.309 kb on - strand at 104.309 kb on - strand at 104.365 kb on + strand, within EX28DRAFT_0157 at 104.366 kb on - strand, within EX28DRAFT_0157 at 104.366 kb on - strand, within EX28DRAFT_0157 at 104.424 kb on - strand, within EX28DRAFT_0157 at 104.460 kb on + strand, within EX28DRAFT_0157 at 104.460 kb on + strand, within EX28DRAFT_0157 at 104.460 kb on + strand, within EX28DRAFT_0157 at 104.460 kb on + strand, within EX28DRAFT_0157 at 104.526 kb on + strand, within EX28DRAFT_0157 at 104.526 kb on + strand, within EX28DRAFT_0157 at 104.532 kb on - strand, within EX28DRAFT_0157 at 104.552 kb on + strand, within EX28DRAFT_0157 at 104.552 kb on + strand, within EX28DRAFT_0157 at 104.955 kb on + strand, within EX28DRAFT_0157 at 104.955 kb on + strand, within EX28DRAFT_0157 at 105.062 kb on + strand, within EX28DRAFT_0157 at 105.150 kb on + strand, within EX28DRAFT_0157 at 105.151 kb on - strand, within EX28DRAFT_0157
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 102,444 + +0.4 102,444 + +0.6 102,444 + +0.1 102,444 + -1.0 102,445 - -0.1 102,445 - +2.0 102,513 + -0.8 102,707 + EX28DRAFT_0155 0.23 +0.9 102,893 + EX28DRAFT_0155 0.44 -0.8 102,925 + EX28DRAFT_0155 0.48 +0.0 103,126 + EX28DRAFT_0155 0.70 -0.9 103,126 + EX28DRAFT_0155 0.70 -0.1 103,207 + EX28DRAFT_0155 0.79 +0.5 103,272 - EX28DRAFT_0155 0.87 -0.3 103,346 + +0.4 103,347 - +0.5 103,348 + -0.9 103,349 - +1.4 103,349 - +0.2 103,388 + +0.3 103,389 - -0.4 103,413 + +0.2 103,664 + EX28DRAFT_0156 0.32 -0.2 103,665 - EX28DRAFT_0156 0.32 +0.5 103,749 - EX28DRAFT_0156 0.42 -0.3 103,817 + EX28DRAFT_0156 0.51 +0.4 103,949 + EX28DRAFT_0156 0.67 -2.4 103,964 + EX28DRAFT_0156 0.68 -2.3 103,964 + EX28DRAFT_0156 0.68 -1.1 103,965 - EX28DRAFT_0156 0.68 -1.6 103,965 - EX28DRAFT_0156 0.68 +0.3 103,967 + EX28DRAFT_0156 0.69 -0.5 103,967 + EX28DRAFT_0156 0.69 -0.7 103,967 + EX28DRAFT_0156 0.69 -3.7 103,968 - EX28DRAFT_0156 0.69 +0.8 103,968 - EX28DRAFT_0156 0.69 +2.1 104,041 + EX28DRAFT_0156 0.78 -0.4 104,042 - EX28DRAFT_0156 0.78 -0.4 104,051 + EX28DRAFT_0156 0.79 +0.3 104,052 - EX28DRAFT_0156 0.79 -0.0 104,120 + EX28DRAFT_0156 0.87 +0.0 104,124 - EX28DRAFT_0156 0.88 -0.1 104,124 - EX28DRAFT_0156 0.88 +0.1 104,308 + -0.1 104,309 - +1.2 104,309 - +0.1 104,309 - +0.5 104,365 + EX28DRAFT_0157 0.14 -0.3 104,366 - EX28DRAFT_0157 0.14 -0.4 104,366 - EX28DRAFT_0157 0.14 +0.1 104,424 - EX28DRAFT_0157 0.19 +0.4 104,460 + EX28DRAFT_0157 0.22 -0.3 104,460 + EX28DRAFT_0157 0.22 +0.9 104,460 + EX28DRAFT_0157 0.22 -2.0 104,460 + EX28DRAFT_0157 0.22 +0.5 104,526 + EX28DRAFT_0157 0.28 -0.0 104,526 + EX28DRAFT_0157 0.28 +1.1 104,532 - EX28DRAFT_0157 0.28 +0.3 104,552 + EX28DRAFT_0157 0.30 +1.0 104,552 + EX28DRAFT_0157 0.30 -1.3 104,955 + EX28DRAFT_0157 0.63 -1.1 104,955 + EX28DRAFT_0157 0.63 +0.1 105,062 + EX28DRAFT_0157 0.72 -4.0 105,150 + EX28DRAFT_0157 0.79 +0.1 105,151 - EX28DRAFT_0157 0.79 +0.6
Or see this region's nucleotide sequence