Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0096 and EX28DRAFT_0097 are separated by 65 nucleotides EX28DRAFT_0097 and EX28DRAFT_0098 are separated by 82 nucleotides EX28DRAFT_0098 and EX28DRAFT_0099 are separated by 304 nucleotides
EX28DRAFT_0096: EX28DRAFT_0096 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 36,967 to 38,304
_0096
EX28DRAFT_0097: EX28DRAFT_0097 - nitrogen regulatory protein P-II family, at 38,370 to 38,708
_0097
EX28DRAFT_0098: EX28DRAFT_0098 - Hemoglobin-like flavoprotein/Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 38,791 to 39,981
_0098
EX28DRAFT_0099: EX28DRAFT_0099 - Glycine/serine hydroxymethyltransferase, at 40,286 to 41,539
_0099
Position (kb) 38
39
40 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 37.849 kb on + strand, within EX28DRAFT_0096 at 38.186 kb on + strand at 38.187 kb on - strand at 38.187 kb on - strand at 38.196 kb on + strand at 38.255 kb on - strand at 38.295 kb on + strand at 38.303 kb on - strand at 38.303 kb on - strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.520 kb on + strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.521 kb on - strand, within EX28DRAFT_0097 at 38.573 kb on + strand, within EX28DRAFT_0097 at 38.595 kb on - strand, within EX28DRAFT_0097 at 38.706 kb on + strand at 38.706 kb on + strand at 38.727 kb on - strand at 38.874 kb on - strand at 38.904 kb on - strand at 38.904 kb on - strand at 39.113 kb on - strand, within EX28DRAFT_0098 at 39.271 kb on - strand, within EX28DRAFT_0098 at 39.366 kb on - strand, within EX28DRAFT_0098 at 39.366 kb on - strand, within EX28DRAFT_0098 at 39.484 kb on + strand, within EX28DRAFT_0098 at 39.485 kb on - strand, within EX28DRAFT_0098 at 39.566 kb on + strand, within EX28DRAFT_0098 at 39.567 kb on - strand, within EX28DRAFT_0098 at 39.698 kb on + strand, within EX28DRAFT_0098 at 39.698 kb on + strand, within EX28DRAFT_0098 at 40.053 kb on - strand at 40.078 kb on + strand at 40.191 kb on + strand at 40.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 37,849 + EX28DRAFT_0096 0.66 +0.8 38,186 + -0.7 38,187 - +0.6 38,187 - +1.0 38,196 + -2.7 38,255 - -2.2 38,295 + +0.1 38,303 - -1.0 38,303 - -2.3 38,344 + +0.1 38,344 + -0.1 38,520 + EX28DRAFT_0097 0.44 -2.7 38,521 - EX28DRAFT_0097 0.45 -0.1 38,521 - EX28DRAFT_0097 0.45 +3.4 38,521 - EX28DRAFT_0097 0.45 -5.3 38,521 - EX28DRAFT_0097 0.45 +1.5 38,521 - EX28DRAFT_0097 0.45 -0.9 38,573 + EX28DRAFT_0097 0.60 -0.6 38,595 - EX28DRAFT_0097 0.66 -0.0 38,706 + -1.0 38,706 + -2.3 38,727 - +0.5 38,874 - -1.5 38,904 - +0.2 38,904 - +0.8 39,113 - EX28DRAFT_0098 0.27 +0.5 39,271 - EX28DRAFT_0098 0.40 +1.0 39,366 - EX28DRAFT_0098 0.48 -0.8 39,366 - EX28DRAFT_0098 0.48 -0.0 39,484 + EX28DRAFT_0098 0.58 -0.3 39,485 - EX28DRAFT_0098 0.58 +0.0 39,566 + EX28DRAFT_0098 0.65 +0.8 39,567 - EX28DRAFT_0098 0.65 +0.5 39,698 + EX28DRAFT_0098 0.76 -0.6 39,698 + EX28DRAFT_0098 0.76 +2.0 40,053 - +1.1 40,078 + -2.2 40,191 + +0.3 40,210 + -5.6
Or see this region's nucleotide sequence