Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0003 and EX28DRAFT_0004 overlap by 17 nucleotides EX28DRAFT_0004 and EX28DRAFT_0005 are separated by 341 nucleotides EX28DRAFT_0005 and EX28DRAFT_0006 are separated by 32 nucleotides EX28DRAFT_0006 and EX28DRAFT_0007 are separated by 10 nucleotides
EX28DRAFT_0003: EX28DRAFT_0003 - bacterioferritin, at 951 to 1,427
_0003
EX28DRAFT_0004: EX28DRAFT_0004 - Type IV leader peptidase family, at 1,411 to 1,923
_0004
EX28DRAFT_0005: EX28DRAFT_0005 - SSU ribosomal protein S10P, at 2,265 to 2,576
_0005
EX28DRAFT_0006: EX28DRAFT_0006 - 50S ribosomal protein L3, bacterial, at 2,609 to 3,238
_0006
EX28DRAFT_0007: EX28DRAFT_0007 - LSU ribosomal protein L4P, at 3,249 to 3,854
_0007
Position (kb) 2
3 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1.282 kb on + strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.290 kb on + strand, within EX28DRAFT_0003 at 1.291 kb on - strand, within EX28DRAFT_0003 at 1.291 kb on - strand, within EX28DRAFT_0003 at 1.395 kb on + strand at 1.444 kb on + strand at 1.539 kb on + strand, within EX28DRAFT_0004 at 1.540 kb on - strand, within EX28DRAFT_0004 at 1.625 kb on - strand, within EX28DRAFT_0004 at 1.677 kb on - strand, within EX28DRAFT_0004 at 1.677 kb on - strand, within EX28DRAFT_0004 at 1.698 kb on - strand, within EX28DRAFT_0004 at 1.818 kb on + strand, within EX28DRAFT_0004 at 1.994 kb on + strand at 1.995 kb on - strand at 1.995 kb on - strand at 2.027 kb on + strand at 2.028 kb on - strand at 2.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,282 + EX28DRAFT_0003 0.69 +1.8 1,283 - EX28DRAFT_0003 0.70 -0.0 1,283 - EX28DRAFT_0003 0.70 +0.2 1,283 - EX28DRAFT_0003 0.70 -0.2 1,290 + EX28DRAFT_0003 0.71 +0.7 1,291 - EX28DRAFT_0003 0.71 +1.0 1,291 - EX28DRAFT_0003 0.71 -1.4 1,395 + +2.3 1,444 + +0.5 1,539 + EX28DRAFT_0004 0.25 -1.9 1,540 - EX28DRAFT_0004 0.25 +0.8 1,625 - EX28DRAFT_0004 0.42 +0.4 1,677 - EX28DRAFT_0004 0.52 +0.3 1,677 - EX28DRAFT_0004 0.52 +1.2 1,698 - EX28DRAFT_0004 0.56 +1.0 1,818 + EX28DRAFT_0004 0.79 +0.5 1,994 + +1.5 1,995 - +1.1 1,995 - -0.2 2,027 + +0.4 2,028 - -0.2 2,028 - -3.1
Or see this region's nucleotide sequence