Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0003

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0001 and EX28DRAFT_0002 are separated by 179 nucleotidesEX28DRAFT_0002 and EX28DRAFT_0003 are separated by 72 nucleotidesEX28DRAFT_0003 and EX28DRAFT_0004 overlap by 17 nucleotidesEX28DRAFT_0004 and EX28DRAFT_0005 are separated by 341 nucleotides EX28DRAFT_0001: EX28DRAFT_0001 - Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain, at 1 to 504 _0001 EX28DRAFT_0002: EX28DRAFT_0002 - Bacterioferritin-associated ferredoxin, at 684 to 878 _0002 EX28DRAFT_0003: EX28DRAFT_0003 - bacterioferritin, at 951 to 1,427 _0003 EX28DRAFT_0004: EX28DRAFT_0004 - Type IV leader peptidase family, at 1,411 to 1,923 _0004 EX28DRAFT_0005: EX28DRAFT_0005 - SSU ribosomal protein S10P, at 2,265 to 2,576 _0005 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.075 kb on + strand, within EX28DRAFT_0001at 0.081 kb on + strand, within EX28DRAFT_0001at 0.313 kb on + strand, within EX28DRAFT_0001at 0.567 kb on + strandat 0.568 kb on - strandat 0.568 kb on - strandat 0.568 kb on - strandat 0.684 kb on - strandat 0.684 kb on - strandat 0.687 kb on + strandat 0.688 kb on - strandat 0.697 kb on + strandat 0.698 kb on - strandat 0.701 kb on + strandat 0.701 kb on + strandat 0.701 kb on + strandat 0.724 kb on + strand, within EX28DRAFT_0002at 0.803 kb on + strand, within EX28DRAFT_0002at 0.811 kb on + strand, within EX28DRAFT_0002at 0.812 kb on - strand, within EX28DRAFT_0002at 0.812 kb on - strand, within EX28DRAFT_0002at 0.812 kb on - strand, within EX28DRAFT_0002at 0.862 kb on - strandat 0.916 kb on + strandat 0.945 kb on + strandat 0.947 kb on + strandat 0.947 kb on + strandat 0.947 kb on + strandat 0.948 kb on - strandat 0.948 kb on - strandat 0.948 kb on - strandat 0.948 kb on - strandat 0.948 kb on - strandat 0.948 kb on - strandat 0.949 kb on + strandat 0.950 kb on - strandat 0.950 kb on - strandat 1.024 kb on - strand, within EX28DRAFT_0003at 1.024 kb on - strand, within EX28DRAFT_0003at 1.061 kb on + strand, within EX28DRAFT_0003at 1.061 kb on + strand, within EX28DRAFT_0003at 1.122 kb on + strand, within EX28DRAFT_0003at 1.122 kb on + strand, within EX28DRAFT_0003at 1.123 kb on - strand, within EX28DRAFT_0003at 1.123 kb on - strand, within EX28DRAFT_0003at 1.123 kb on - strand, within EX28DRAFT_0003at 1.282 kb on + strand, within EX28DRAFT_0003at 1.283 kb on - strand, within EX28DRAFT_0003at 1.283 kb on - strand, within EX28DRAFT_0003at 1.283 kb on - strand, within EX28DRAFT_0003at 1.290 kb on + strand, within EX28DRAFT_0003at 1.291 kb on - strand, within EX28DRAFT_0003at 1.291 kb on - strand, within EX28DRAFT_0003at 1.395 kb on + strandat 1.444 kb on + strandat 1.539 kb on + strand, within EX28DRAFT_0004at 1.540 kb on - strand, within EX28DRAFT_0004at 1.625 kb on - strand, within EX28DRAFT_0004at 1.677 kb on - strand, within EX28DRAFT_0004at 1.677 kb on - strand, within EX28DRAFT_0004at 1.698 kb on - strand, within EX28DRAFT_0004at 1.818 kb on + strand, within EX28DRAFT_0004at 1.994 kb on + strandat 1.995 kb on - strandat 1.995 kb on - strandat 2.027 kb on + strandat 2.028 kb on - strandat 2.028 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
75 + EX28DRAFT_0001 0.15 -0.8
81 + EX28DRAFT_0001 0.16 -0.3
313 + EX28DRAFT_0001 0.62 +0.7
567 + -0.2
568 - +2.5
568 - +2.5
568 - +0.1
684 - +0.2
684 - -0.1
687 + -0.4
688 - -0.5
697 + -0.7
698 - +1.6
701 + +0.6
701 + +2.3
701 + -0.4
724 + EX28DRAFT_0002 0.21 +0.5
803 + EX28DRAFT_0002 0.61 -0.7
811 + EX28DRAFT_0002 0.65 -0.4
812 - EX28DRAFT_0002 0.66 -0.1
812 - EX28DRAFT_0002 0.66 -3.8
812 - EX28DRAFT_0002 0.66 -0.3
862 - +0.7
916 + +0.3
945 + +0.6
947 + +0.4
947 + +0.5
947 + +1.1
948 - +0.4
948 - +0.5
948 - +0.4
948 - +1.0
948 - +0.8
948 - +0.1
949 + +0.8
950 - +1.2
950 - +0.5
1,024 - EX28DRAFT_0003 0.15 +0.8
1,024 - EX28DRAFT_0003 0.15 +0.9
1,061 + EX28DRAFT_0003 0.23 +0.4
1,061 + EX28DRAFT_0003 0.23 +0.1
1,122 + EX28DRAFT_0003 0.36 +0.5
1,122 + EX28DRAFT_0003 0.36 +0.0
1,123 - EX28DRAFT_0003 0.36 +1.6
1,123 - EX28DRAFT_0003 0.36 +0.9
1,123 - EX28DRAFT_0003 0.36 -1.6
1,282 + EX28DRAFT_0003 0.69 +1.8
1,283 - EX28DRAFT_0003 0.70 -0.0
1,283 - EX28DRAFT_0003 0.70 +0.2
1,283 - EX28DRAFT_0003 0.70 -0.2
1,290 + EX28DRAFT_0003 0.71 +0.7
1,291 - EX28DRAFT_0003 0.71 +1.0
1,291 - EX28DRAFT_0003 0.71 -1.4
1,395 + +2.3
1,444 + +0.5
1,539 + EX28DRAFT_0004 0.25 -1.9
1,540 - EX28DRAFT_0004 0.25 +0.8
1,625 - EX28DRAFT_0004 0.42 +0.4
1,677 - EX28DRAFT_0004 0.52 +0.3
1,677 - EX28DRAFT_0004 0.52 +1.2
1,698 - EX28DRAFT_0004 0.56 +1.0
1,818 + EX28DRAFT_0004 0.79 +0.5
1,994 + +1.5
1,995 - +1.1
1,995 - -0.2
2,027 + +0.4
2,028 - -0.2
2,028 - -3.1

Or see this region's nucleotide sequence