Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20040

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20030 and CA264_20035 are separated by 99 nucleotidesCA264_20035 and CA264_20040 are separated by 0 nucleotidesCA264_20040 and CA264_20045 are separated by 7 nucleotidesCA264_20045 and CA264_20050 overlap by 17 nucleotides CA264_20030: CA264_20030 - GNAT family N-acetyltransferase, at 4,618,378 to 4,619,247 _20030 CA264_20035: CA264_20035 - QacE family quaternary ammonium compound efflux SMR transporter, at 4,619,347 to 4,619,679 _20035 CA264_20040: CA264_20040 - hypothetical protein, at 4,619,680 to 4,620,483 _20040 CA264_20045: CA264_20045 - UDP-2,3-diacylglucosamine hydrolase, at 4,620,491 to 4,621,261 _20045 CA264_20050: CA264_20050 - hypothetical protein, at 4,621,245 to 4,621,898 _20050 Position (kb) 4619 4620 4621Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4618.683 kb on + strand, within CA264_20030at 4618.683 kb on + strand, within CA264_20030at 4618.683 kb on + strand, within CA264_20030at 4618.683 kb on + strand, within CA264_20030at 4618.683 kb on + strand, within CA264_20030at 4618.684 kb on - strand, within CA264_20030at 4618.736 kb on + strand, within CA264_20030at 4618.737 kb on - strand, within CA264_20030at 4618.758 kb on + strand, within CA264_20030at 4618.766 kb on - strand, within CA264_20030at 4618.890 kb on - strand, within CA264_20030at 4619.028 kb on + strand, within CA264_20030at 4619.029 kb on - strand, within CA264_20030at 4619.029 kb on - strand, within CA264_20030at 4619.172 kb on + strandat 4619.173 kb on - strandat 4619.173 kb on - strandat 4619.221 kb on + strandat 4619.245 kb on + strandat 4619.306 kb on + strandat 4619.306 kb on + strandat 4619.328 kb on + strandat 4619.328 kb on + strandat 4619.328 kb on + strandat 4619.329 kb on - strandat 4619.329 kb on - strandat 4619.342 kb on - strandat 4619.342 kb on - strandat 4619.344 kb on - strandat 4619.346 kb on + strandat 4619.347 kb on - strandat 4619.365 kb on + strandat 4619.682 kb on - strandat 4619.756 kb on + strandat 4619.834 kb on - strand, within CA264_20040at 4619.840 kb on + strand, within CA264_20040at 4619.840 kb on + strand, within CA264_20040at 4619.840 kb on + strand, within CA264_20040at 4619.900 kb on + strand, within CA264_20040at 4619.967 kb on - strand, within CA264_20040at 4620.219 kb on - strand, within CA264_20040at 4620.262 kb on + strand, within CA264_20040at 4620.263 kb on - strand, within CA264_20040at 4620.288 kb on - strand, within CA264_20040at 4620.350 kb on + strand, within CA264_20040at 4620.350 kb on + strand, within CA264_20040at 4620.351 kb on - strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.393 kb on + strand, within CA264_20040at 4620.402 kb on + strand, within CA264_20040at 4620.402 kb on + strand, within CA264_20040at 4620.402 kb on + strand, within CA264_20040at 4620.403 kb on - strandat 4620.473 kb on - strandat 4620.473 kb on - strandat 4620.482 kb on - strandat 4620.482 kb on - strandat 4620.483 kb on + strandat 4620.484 kb on - strandat 4621.305 kb on + strandat 4621.381 kb on + strand, within CA264_20050at 4621.381 kb on + strand, within CA264_20050at 4621.382 kb on - strand, within CA264_20050at 4621.382 kb on - strand, within CA264_20050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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4,618,683 + CA264_20030 0.35 +0.9
4,618,683 + CA264_20030 0.35 -1.2
4,618,683 + CA264_20030 0.35 -0.5
4,618,683 + CA264_20030 0.35 +0.1
4,618,683 + CA264_20030 0.35 -0.4
4,618,684 - CA264_20030 0.35 +0.3
4,618,736 + CA264_20030 0.41 -0.6
4,618,737 - CA264_20030 0.41 +0.2
4,618,758 + CA264_20030 0.44 -1.8
4,618,766 - CA264_20030 0.45 -1.0
4,618,890 - CA264_20030 0.59 +1.5
4,619,028 + CA264_20030 0.75 +0.6
4,619,029 - CA264_20030 0.75 +0.4
4,619,029 - CA264_20030 0.75 +0.1
4,619,172 + -0.8
4,619,173 - -0.7
4,619,173 - -0.5
4,619,221 + -0.6
4,619,245 + -0.9
4,619,306 + -0.6
4,619,306 + +0.2
4,619,328 + -0.8
4,619,328 + -1.0
4,619,328 + -0.5
4,619,329 - -0.1
4,619,329 - +0.8
4,619,342 - -0.0
4,619,342 - +0.2
4,619,344 - -0.5
4,619,346 + -0.6
4,619,347 - +0.7
4,619,365 + -1.4
4,619,682 - -0.1
4,619,756 + -0.9
4,619,834 - CA264_20040 0.19 +0.1
4,619,840 + CA264_20040 0.20 -1.2
4,619,840 + CA264_20040 0.20 -0.4
4,619,840 + CA264_20040 0.20 -0.5
4,619,900 + CA264_20040 0.27 -2.0
4,619,967 - CA264_20040 0.36 -0.5
4,620,219 - CA264_20040 0.67 -2.4
4,620,262 + CA264_20040 0.72 -1.6
4,620,263 - CA264_20040 0.73 +0.9
4,620,288 - CA264_20040 0.76 -1.0
4,620,350 + CA264_20040 0.83 -2.7
4,620,350 + CA264_20040 0.83 +0.5
4,620,351 - CA264_20040 0.83 +0.8
4,620,352 + CA264_20040 0.84 +1.2
4,620,352 + CA264_20040 0.84 -1.8
4,620,352 + CA264_20040 0.84 -2.8
4,620,352 + CA264_20040 0.84 -2.2
4,620,352 + CA264_20040 0.84 -0.1
4,620,353 - CA264_20040 0.84 +1.2
4,620,353 - CA264_20040 0.84 +0.5
4,620,353 - CA264_20040 0.84 +1.0
4,620,353 - CA264_20040 0.84 +0.9
4,620,353 - CA264_20040 0.84 +0.3
4,620,353 - CA264_20040 0.84 -0.6
4,620,393 + CA264_20040 0.89 -3.8
4,620,402 + CA264_20040 0.90 -0.8
4,620,402 + CA264_20040 0.90 -0.5
4,620,402 + CA264_20040 0.90 -1.8
4,620,403 - +0.6
4,620,473 - -0.4
4,620,473 - -0.3
4,620,482 - +0.2
4,620,482 - -0.1
4,620,483 + +1.5
4,620,484 - -1.0
4,621,305 + +0.3
4,621,381 + CA264_20050 0.21 -0.8
4,621,381 + CA264_20050 0.21 -1.1
4,621,382 - CA264_20050 0.21 +0.2
4,621,382 - CA264_20050 0.21 +0.0

Or see this region's nucleotide sequence