Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19935

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19930 and CA264_19935 are separated by 155 nucleotidesCA264_19935 and CA264_19940 are separated by 172 nucleotides CA264_19930: CA264_19930 - NAD(P)-dependent oxidoreductase, at 4,595,752 to 4,596,663 _19930 CA264_19935: CA264_19935 - sodium:calcium symporter, at 4,596,819 to 4,598,471 _19935 CA264_19940: CA264_19940 - DNA uptake-like protein, at 4,598,644 to 4,599,588 _19940 Position (kb) 4596 4597 4598 4599Strain fitness (log2 ratio) -2 -1 0 1at 4596.661 kb on + strandat 4596.661 kb on + strandat 4596.662 kb on - strandat 4596.682 kb on + strandat 4596.736 kb on + strandat 4596.737 kb on - strandat 4596.737 kb on - strandat 4596.740 kb on + strandat 4596.740 kb on + strandat 4596.776 kb on + strandat 4596.776 kb on + strandat 4596.776 kb on + strandat 4596.776 kb on + strandat 4596.777 kb on - strandat 4596.777 kb on - strandat 4596.777 kb on - strandat 4596.779 kb on + strandat 4596.779 kb on + strandat 4596.779 kb on + strandat 4596.779 kb on + strandat 4596.784 kb on + strandat 4596.784 kb on + strandat 4596.785 kb on - strandat 4596.790 kb on - strandat 4596.794 kb on - strandat 4596.886 kb on + strandat 4596.887 kb on - strandat 4596.925 kb on + strandat 4597.093 kb on - strand, within CA264_19935at 4597.138 kb on - strand, within CA264_19935at 4597.170 kb on + strand, within CA264_19935at 4597.170 kb on + strand, within CA264_19935at 4597.242 kb on + strand, within CA264_19935at 4597.587 kb on + strand, within CA264_19935at 4597.596 kb on + strand, within CA264_19935at 4597.597 kb on - strand, within CA264_19935at 4597.826 kb on + strand, within CA264_19935at 4597.913 kb on + strand, within CA264_19935at 4597.977 kb on - strand, within CA264_19935at 4597.995 kb on + strand, within CA264_19935at 4597.996 kb on - strand, within CA264_19935at 4598.013 kb on + strand, within CA264_19935at 4598.031 kb on - strand, within CA264_19935at 4598.292 kb on - strand, within CA264_19935at 4598.299 kb on + strand, within CA264_19935at 4598.300 kb on - strand, within CA264_19935at 4598.387 kb on + strandat 4598.388 kb on - strandat 4598.392 kb on + strandat 4598.393 kb on - strandat 4598.393 kb on - strandat 4598.404 kb on + strandat 4598.430 kb on + strandat 4598.469 kb on + strandat 4598.494 kb on - strandat 4598.533 kb on - strandat 4598.591 kb on + strandat 4598.626 kb on - strandat 4598.727 kb on - strandat 4598.770 kb on + strand, within CA264_19940at 4598.793 kb on + strand, within CA264_19940at 4598.872 kb on + strand, within CA264_19940at 4598.993 kb on + strand, within CA264_19940at 4599.007 kb on + strand, within CA264_19940at 4599.008 kb on - strand, within CA264_19940at 4599.070 kb on + strand, within CA264_19940at 4599.071 kb on - strand, within CA264_19940at 4599.074 kb on + strand, within CA264_19940at 4599.075 kb on - strand, within CA264_19940at 4599.103 kb on + strand, within CA264_19940at 4599.103 kb on + strand, within CA264_19940at 4599.106 kb on - strand, within CA264_19940at 4599.106 kb on - strand, within CA264_19940at 4599.106 kb on - strand, within CA264_19940at 4599.119 kb on - strand, within CA264_19940at 4599.278 kb on - strand, within CA264_19940at 4599.303 kb on + strand, within CA264_19940at 4599.303 kb on + strand, within CA264_19940at 4599.328 kb on + strand, within CA264_19940at 4599.328 kb on + strand, within CA264_19940at 4599.368 kb on - strand, within CA264_19940at 4599.369 kb on + strand, within CA264_19940at 4599.370 kb on - strand, within CA264_19940at 4599.404 kb on + strand, within CA264_19940at 4599.405 kb on - strand, within CA264_19940at 4599.448 kb on + strand, within CA264_19940

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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4,596,661 + -0.3
4,596,661 + +0.1
4,596,662 - +0.1
4,596,682 + +0.1
4,596,736 + -0.5
4,596,737 - -0.1
4,596,737 - -0.1
4,596,740 + +0.2
4,596,740 + +0.3
4,596,776 + +0.1
4,596,776 + +0.0
4,596,776 + -0.5
4,596,776 + +0.4
4,596,777 - -0.3
4,596,777 - +1.1
4,596,777 - -1.4
4,596,779 + -0.1
4,596,779 + +0.5
4,596,779 + -0.5
4,596,779 + +0.1
4,596,784 + +0.5
4,596,784 + +0.6
4,596,785 - +0.3
4,596,790 - +0.4
4,596,794 - -0.1
4,596,886 + -0.5
4,596,887 - +0.6
4,596,925 + -0.3
4,597,093 - CA264_19935 0.17 +1.1
4,597,138 - CA264_19935 0.19 +0.6
4,597,170 + CA264_19935 0.21 -0.3
4,597,170 + CA264_19935 0.21 -1.0
4,597,242 + CA264_19935 0.26 -0.4
4,597,587 + CA264_19935 0.46 -1.8
4,597,596 + CA264_19935 0.47 -0.3
4,597,597 - CA264_19935 0.47 -0.2
4,597,826 + CA264_19935 0.61 -1.7
4,597,913 + CA264_19935 0.66 +0.1
4,597,977 - CA264_19935 0.70 -0.6
4,597,995 + CA264_19935 0.71 -0.2
4,597,996 - CA264_19935 0.71 -1.5
4,598,013 + CA264_19935 0.72 -1.3
4,598,031 - CA264_19935 0.73 -0.7
4,598,292 - CA264_19935 0.89 +1.5
4,598,299 + CA264_19935 0.90 -0.7
4,598,300 - CA264_19935 0.90 -0.8
4,598,387 + -1.8
4,598,388 - -0.1
4,598,392 + -0.5
4,598,393 - -0.5
4,598,393 - -0.4
4,598,404 + -0.4
4,598,430 + -0.2
4,598,469 + -1.0
4,598,494 - -1.0
4,598,533 - -0.3
4,598,591 + -0.8
4,598,626 - -0.3
4,598,727 - +0.0
4,598,770 + CA264_19940 0.13 -0.1
4,598,793 + CA264_19940 0.16 +0.3
4,598,872 + CA264_19940 0.24 -0.1
4,598,993 + CA264_19940 0.37 +0.2
4,599,007 + CA264_19940 0.38 -0.3
4,599,008 - CA264_19940 0.39 +0.8
4,599,070 + CA264_19940 0.45 -0.7
4,599,071 - CA264_19940 0.45 -1.1
4,599,074 + CA264_19940 0.46 -0.1
4,599,075 - CA264_19940 0.46 -0.1
4,599,103 + CA264_19940 0.49 -0.0
4,599,103 + CA264_19940 0.49 +0.7
4,599,106 - CA264_19940 0.49 -0.1
4,599,106 - CA264_19940 0.49 +0.4
4,599,106 - CA264_19940 0.49 -0.5
4,599,119 - CA264_19940 0.50 -0.5
4,599,278 - CA264_19940 0.67 +0.5
4,599,303 + CA264_19940 0.70 -2.4
4,599,303 + CA264_19940 0.70 -0.0
4,599,328 + CA264_19940 0.72 -0.1
4,599,328 + CA264_19940 0.72 -0.1
4,599,368 - CA264_19940 0.77 +1.1
4,599,369 + CA264_19940 0.77 +1.0
4,599,370 - CA264_19940 0.77 +0.7
4,599,404 + CA264_19940 0.80 -1.5
4,599,405 - CA264_19940 0.81 +0.1
4,599,448 + CA264_19940 0.85 -0.4

Or see this region's nucleotide sequence