Experiment: m.b. Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18960 and CA264_18965 are separated by 75 nucleotides CA264_18965 and CA264_18970 overlap by 44 nucleotides CA264_18970 and CA264_18975 are separated by 2 nucleotides
CA264_18960: CA264_18960 - glucose dehydrogenase, at 4,399,523 to 4,400,980
_18960
CA264_18965: CA264_18965 - hypothetical protein, at 4,401,056 to 4,401,439
_18965
CA264_18970: CA264_18970 - hypothetical protein, at 4,401,396 to 4,401,752
_18970
CA264_18975: CA264_18975 - T9SS C-terminal target domain-containing protein, at 4,401,755 to 4,403,704
_18975
Position (kb)
4401
4402 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4400.101 kb on - strand, within CA264_18960 at 4400.101 kb on - strand, within CA264_18960 at 4400.118 kb on + strand, within CA264_18960 at 4400.118 kb on + strand, within CA264_18960 at 4400.118 kb on + strand, within CA264_18960 at 4400.283 kb on + strand, within CA264_18960 at 4400.337 kb on + strand, within CA264_18960 at 4400.337 kb on + strand, within CA264_18960 at 4400.337 kb on + strand, within CA264_18960 at 4400.338 kb on - strand, within CA264_18960 at 4400.409 kb on + strand, within CA264_18960 at 4400.410 kb on - strand, within CA264_18960 at 4400.415 kb on + strand, within CA264_18960 at 4400.415 kb on + strand, within CA264_18960 at 4400.415 kb on + strand, within CA264_18960 at 4400.415 kb on + strand, within CA264_18960 at 4400.415 kb on + strand, within CA264_18960 at 4400.416 kb on - strand, within CA264_18960 at 4400.416 kb on - strand, within CA264_18960 at 4400.416 kb on - strand, within CA264_18960 at 4400.522 kb on - strand, within CA264_18960 at 4400.534 kb on + strand, within CA264_18960 at 4400.537 kb on + strand, within CA264_18960 at 4400.538 kb on - strand, within CA264_18960 at 4400.632 kb on + strand, within CA264_18960 at 4400.633 kb on - strand, within CA264_18960 at 4400.680 kb on - strand, within CA264_18960 at 4400.696 kb on + strand, within CA264_18960 at 4400.740 kb on - strand, within CA264_18960 at 4400.758 kb on - strand, within CA264_18960 at 4400.758 kb on - strand, within CA264_18960 at 4400.758 kb on - strand, within CA264_18960 at 4400.946 kb on - strand at 4400.971 kb on + strand at 4400.980 kb on + strand at 4400.980 kb on + strand at 4400.980 kb on + strand at 4400.981 kb on - strand at 4401.007 kb on + strand at 4401.012 kb on + strand at 4401.012 kb on + strand at 4401.077 kb on + strand at 4401.247 kb on + strand, within CA264_18965 at 4401.247 kb on + strand, within CA264_18965 at 4401.247 kb on + strand, within CA264_18965 at 4401.248 kb on - strand, within CA264_18965 at 4401.327 kb on + strand, within CA264_18965 at 4401.327 kb on + strand, within CA264_18965 at 4401.327 kb on + strand, within CA264_18965 at 4401.327 kb on + strand, within CA264_18965 at 4401.350 kb on + strand, within CA264_18965 at 4401.378 kb on + strand, within CA264_18965 at 4401.388 kb on + strand, within CA264_18965 at 4401.389 kb on - strand, within CA264_18965 at 4401.395 kb on + strand, within CA264_18965 at 4401.404 kb on + strand at 4401.404 kb on + strand at 4401.405 kb on - strand at 4401.406 kb on + strand at 4401.407 kb on - strand at 4401.407 kb on - strand at 4401.621 kb on + strand, within CA264_18970 at 4401.622 kb on - strand, within CA264_18970 at 4401.622 kb on - strand, within CA264_18970 at 4401.654 kb on - strand, within CA264_18970 at 4401.691 kb on - strand, within CA264_18970 at 4401.696 kb on + strand, within CA264_18970 at 4401.748 kb on - strand at 4401.751 kb on - strand at 4401.790 kb on - strand at 4401.790 kb on - strand at 4401.880 kb on + strand at 4401.881 kb on - strand at 4401.883 kb on - strand at 4401.913 kb on - strand at 4401.916 kb on + strand at 4401.917 kb on - strand at 4402.142 kb on + strand, within CA264_18975 at 4402.143 kb on - strand, within CA264_18975 at 4402.145 kb on - strand, within CA264_18975 at 4402.238 kb on + strand, within CA264_18975 at 4402.271 kb on - strand, within CA264_18975 at 4402.272 kb on + strand, within CA264_18975 at 4402.272 kb on + strand, within CA264_18975 at 4402.297 kb on - strand, within CA264_18975 at 4402.433 kb on - strand, within CA264_18975
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM remove 4,400,101 - CA264_18960 0.40 -0.2 4,400,101 - CA264_18960 0.40 +0.0 4,400,118 + CA264_18960 0.41 -0.4 4,400,118 + CA264_18960 0.41 +1.4 4,400,118 + CA264_18960 0.41 -0.0 4,400,283 + CA264_18960 0.52 +0.6 4,400,337 + CA264_18960 0.56 -0.4 4,400,337 + CA264_18960 0.56 -0.2 4,400,337 + CA264_18960 0.56 -0.0 4,400,338 - CA264_18960 0.56 -0.9 4,400,409 + CA264_18960 0.61 -0.2 4,400,410 - CA264_18960 0.61 -0.1 4,400,415 + CA264_18960 0.61 -0.6 4,400,415 + CA264_18960 0.61 -0.8 4,400,415 + CA264_18960 0.61 -0.8 4,400,415 + CA264_18960 0.61 +1.1 4,400,415 + CA264_18960 0.61 -0.3 4,400,416 - CA264_18960 0.61 -0.3 4,400,416 - CA264_18960 0.61 -0.2 4,400,416 - CA264_18960 0.61 -0.4 4,400,522 - CA264_18960 0.69 -0.4 4,400,534 + CA264_18960 0.69 -0.2 4,400,537 + CA264_18960 0.70 +0.7 4,400,538 - CA264_18960 0.70 -0.3 4,400,632 + CA264_18960 0.76 -0.3 4,400,633 - CA264_18960 0.76 +0.5 4,400,680 - CA264_18960 0.79 +0.3 4,400,696 + CA264_18960 0.80 -1.3 4,400,740 - CA264_18960 0.83 -0.1 4,400,758 - CA264_18960 0.85 -0.0 4,400,758 - CA264_18960 0.85 -0.4 4,400,758 - CA264_18960 0.85 -0.4 4,400,946 - +0.1 4,400,971 + -0.6 4,400,980 + -0.1 4,400,980 + +0.8 4,400,980 + +0.9 4,400,981 - -0.6 4,401,007 + -1.2 4,401,012 + -0.0 4,401,012 + -1.0 4,401,077 + -0.5 4,401,247 + CA264_18965 0.50 +0.1 4,401,247 + CA264_18965 0.50 +1.2 4,401,247 + CA264_18965 0.50 -3.0 4,401,248 - CA264_18965 0.50 +0.1 4,401,327 + CA264_18965 0.71 +0.1 4,401,327 + CA264_18965 0.71 +0.4 4,401,327 + CA264_18965 0.71 +0.0 4,401,327 + CA264_18965 0.71 +0.8 4,401,350 + CA264_18965 0.77 +0.5 4,401,378 + CA264_18965 0.84 -0.3 4,401,388 + CA264_18965 0.86 +0.1 4,401,389 - CA264_18965 0.87 -0.0 4,401,395 + CA264_18965 0.88 +1.1 4,401,404 + -0.2 4,401,404 + +0.4 4,401,405 - +0.6 4,401,406 + +1.1 4,401,407 - -0.4 4,401,407 - -0.2 4,401,621 + CA264_18970 0.63 +0.9 4,401,622 - CA264_18970 0.63 +0.1 4,401,622 - CA264_18970 0.63 +0.4 4,401,654 - CA264_18970 0.72 -0.3 4,401,691 - CA264_18970 0.83 -0.1 4,401,696 + CA264_18970 0.84 +0.7 4,401,748 - -0.2 4,401,751 - -0.2 4,401,790 - +0.5 4,401,790 - +1.3 4,401,880 + -0.2 4,401,881 - -0.3 4,401,883 - -0.1 4,401,913 - +0.0 4,401,916 + +0.2 4,401,917 - -1.3 4,402,142 + CA264_18975 0.20 -0.4 4,402,143 - CA264_18975 0.20 -0.1 4,402,145 - CA264_18975 0.20 -0.1 4,402,238 + CA264_18975 0.25 -0.2 4,402,271 - CA264_18975 0.26 -0.8 4,402,272 + CA264_18975 0.27 +0.1 4,402,272 + CA264_18975 0.27 +0.1 4,402,297 - CA264_18975 0.28 -0.6 4,402,433 - CA264_18975 0.35 -0.2
Or see this region's nucleotide sequence