Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16215

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16210 and CA264_16215 are separated by 34 nucleotidesCA264_16215 and CA264_16220 are separated by 131 nucleotides CA264_16210: CA264_16210 - thioredoxin family protein, at 3,771,351 to 3,771,983 _16210 CA264_16215: CA264_16215 - redoxin, at 3,772,018 to 3,772,515 _16215 CA264_16220: CA264_16220 - sulfite reductase, at 3,772,647 to 3,773,930 _16220 Position (kb) 3772 3773Strain fitness (log2 ratio) -2 -1 0 1 2at 3771.026 kb on - strandat 3771.146 kb on + strandat 3771.162 kb on - strandat 3771.162 kb on - strandat 3771.167 kb on + strandat 3771.232 kb on - strandat 3771.246 kb on - strandat 3771.272 kb on + strandat 3771.274 kb on + strandat 3771.317 kb on + strandat 3771.317 kb on + strandat 3771.317 kb on + strandat 3771.343 kb on + strandat 3771.344 kb on - strandat 3771.344 kb on - strandat 3771.347 kb on + strandat 3771.449 kb on - strand, within CA264_16210at 3771.478 kb on + strand, within CA264_16210at 3771.478 kb on + strand, within CA264_16210at 3771.479 kb on - strand, within CA264_16210at 3771.483 kb on - strand, within CA264_16210at 3771.490 kb on - strand, within CA264_16210at 3771.503 kb on - strand, within CA264_16210at 3771.507 kb on + strand, within CA264_16210at 3771.544 kb on + strand, within CA264_16210at 3771.608 kb on - strand, within CA264_16210at 3771.608 kb on - strand, within CA264_16210at 3771.650 kb on + strand, within CA264_16210at 3771.725 kb on - strand, within CA264_16210at 3771.725 kb on - strand, within CA264_16210at 3771.729 kb on - strand, within CA264_16210at 3771.788 kb on + strand, within CA264_16210at 3771.789 kb on - strand, within CA264_16210at 3771.789 kb on - strand, within CA264_16210at 3771.820 kb on + strand, within CA264_16210at 3771.820 kb on + strand, within CA264_16210at 3771.820 kb on + strand, within CA264_16210at 3771.821 kb on - strand, within CA264_16210at 3771.864 kb on - strand, within CA264_16210at 3771.864 kb on - strand, within CA264_16210at 3771.983 kb on + strandat 3771.987 kb on + strandat 3771.987 kb on + strandat 3771.988 kb on - strandat 3771.988 kb on - strandat 3771.990 kb on - strandat 3772.007 kb on + strandat 3772.082 kb on + strand, within CA264_16215at 3772.101 kb on + strand, within CA264_16215at 3772.102 kb on - strand, within CA264_16215at 3772.105 kb on + strand, within CA264_16215at 3772.105 kb on + strand, within CA264_16215at 3772.260 kb on + strand, within CA264_16215at 3772.261 kb on - strand, within CA264_16215at 3772.332 kb on + strand, within CA264_16215at 3772.373 kb on + strand, within CA264_16215at 3772.426 kb on + strand, within CA264_16215at 3772.427 kb on - strand, within CA264_16215at 3772.468 kb on + strandat 3772.469 kb on - strandat 3772.515 kb on + strandat 3772.523 kb on + strandat 3772.581 kb on + strandat 3772.632 kb on + strandat 3772.635 kb on - strandat 3772.775 kb on - strandat 3772.798 kb on + strand, within CA264_16220at 3772.799 kb on - strand, within CA264_16220at 3773.020 kb on - strand, within CA264_16220at 3773.021 kb on + strand, within CA264_16220at 3773.022 kb on - strand, within CA264_16220at 3773.022 kb on - strand, within CA264_16220at 3773.111 kb on + strand, within CA264_16220at 3773.111 kb on + strand, within CA264_16220at 3773.189 kb on + strand, within CA264_16220at 3773.190 kb on - strand, within CA264_16220at 3773.204 kb on + strand, within CA264_16220at 3773.212 kb on + strand, within CA264_16220at 3773.276 kb on + strand, within CA264_16220at 3773.340 kb on + strand, within CA264_16220at 3773.345 kb on + strand, within CA264_16220at 3773.346 kb on - strand, within CA264_16220at 3773.494 kb on + strand, within CA264_16220at 3773.495 kb on - strand, within CA264_16220at 3773.498 kb on + strand, within CA264_16220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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3,771,026 - -0.2
3,771,146 + -0.3
3,771,162 - -0.2
3,771,162 - +0.6
3,771,167 + -0.9
3,771,232 - -0.8
3,771,246 - -0.2
3,771,272 + -0.3
3,771,274 + -0.4
3,771,317 + +0.2
3,771,317 + -1.2
3,771,317 + +1.5
3,771,343 + -0.3
3,771,344 - -1.4
3,771,344 - -0.9
3,771,347 + +0.0
3,771,449 - CA264_16210 0.15 +1.5
3,771,478 + CA264_16210 0.20 -1.0
3,771,478 + CA264_16210 0.20 -0.0
3,771,479 - CA264_16210 0.20 -0.8
3,771,483 - CA264_16210 0.21 -0.3
3,771,490 - CA264_16210 0.22 -0.2
3,771,503 - CA264_16210 0.24 -0.1
3,771,507 + CA264_16210 0.25 -1.9
3,771,544 + CA264_16210 0.30 +0.2
3,771,608 - CA264_16210 0.41 -0.0
3,771,608 - CA264_16210 0.41 -0.9
3,771,650 + CA264_16210 0.47 +1.1
3,771,725 - CA264_16210 0.59 -1.6
3,771,725 - CA264_16210 0.59 -0.6
3,771,729 - CA264_16210 0.60 +0.0
3,771,788 + CA264_16210 0.69 -0.7
3,771,789 - CA264_16210 0.69 -1.2
3,771,789 - CA264_16210 0.69 -0.2
3,771,820 + CA264_16210 0.74 -0.3
3,771,820 + CA264_16210 0.74 -0.2
3,771,820 + CA264_16210 0.74 -0.7
3,771,821 - CA264_16210 0.74 -0.6
3,771,864 - CA264_16210 0.81 -0.1
3,771,864 - CA264_16210 0.81 +0.5
3,771,983 + +0.5
3,771,987 + +1.4
3,771,987 + -0.1
3,771,988 - -0.2
3,771,988 - -0.4
3,771,990 - -0.1
3,772,007 + -0.1
3,772,082 + CA264_16215 0.13 -1.5
3,772,101 + CA264_16215 0.17 +0.7
3,772,102 - CA264_16215 0.17 -0.4
3,772,105 + CA264_16215 0.17 -1.2
3,772,105 + CA264_16215 0.17 +1.0
3,772,260 + CA264_16215 0.49 +0.4
3,772,261 - CA264_16215 0.49 +0.7
3,772,332 + CA264_16215 0.63 -0.2
3,772,373 + CA264_16215 0.71 +0.4
3,772,426 + CA264_16215 0.82 +2.0
3,772,427 - CA264_16215 0.82 -0.7
3,772,468 + +0.4
3,772,469 - -0.3
3,772,515 + +0.2
3,772,523 + -0.1
3,772,581 + -0.3
3,772,632 + -0.5
3,772,635 - -0.2
3,772,775 - -0.5
3,772,798 + CA264_16220 0.12 -0.2
3,772,799 - CA264_16220 0.12 -0.4
3,773,020 - CA264_16220 0.29 +0.2
3,773,021 + CA264_16220 0.29 +0.3
3,773,022 - CA264_16220 0.29 -0.4
3,773,022 - CA264_16220 0.29 +0.2
3,773,111 + CA264_16220 0.36 -0.4
3,773,111 + CA264_16220 0.36 +0.5
3,773,189 + CA264_16220 0.42 +0.6
3,773,190 - CA264_16220 0.42 -2.2
3,773,204 + CA264_16220 0.43 -0.3
3,773,212 + CA264_16220 0.44 -0.4
3,773,276 + CA264_16220 0.49 -0.2
3,773,340 + CA264_16220 0.54 -0.2
3,773,345 + CA264_16220 0.54 -1.2
3,773,346 - CA264_16220 0.54 +0.5
3,773,494 + CA264_16220 0.66 -0.5
3,773,495 - CA264_16220 0.66 +0.8
3,773,498 + CA264_16220 0.66 -0.2

Or see this region's nucleotide sequence