Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15895

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15885 and CA264_15890 are separated by 211 nucleotidesCA264_15890 and CA264_15895 are separated by 204 nucleotidesCA264_15895 and CA264_15900 are separated by 105 nucleotidesCA264_15900 and CA264_15905 are separated by 118 nucleotides CA264_15885: CA264_15885 - TetR family transcriptional regulator, at 3,708,132 to 3,708,665 _15885 CA264_15890: CA264_15890 - hypothetical protein, at 3,708,877 to 3,709,173 _15890 CA264_15895: CA264_15895 - hypothetical protein, at 3,709,378 to 3,710,541 _15895 CA264_15900: CA264_15900 - SAM-dependent methyltransferase, at 3,710,647 to 3,711,330 _15900 CA264_15905: CA264_15905 - esterase, at 3,711,449 to 3,711,877 _15905 Position (kb) 3709 3710 3711Strain fitness (log2 ratio) -2 -1 0 1at 3708.654 kb on + strandat 3708.655 kb on - strandat 3708.664 kb on - strandat 3708.719 kb on + strandat 3708.720 kb on - strandat 3708.745 kb on + strandat 3708.767 kb on - strandat 3708.796 kb on + strandat 3708.799 kb on - strandat 3708.833 kb on + strandat 3708.834 kb on - strandat 3708.842 kb on + strandat 3708.867 kb on - strandat 3708.872 kb on + strandat 3708.873 kb on - strandat 3708.874 kb on + strandat 3708.874 kb on + strandat 3708.875 kb on - strandat 3708.968 kb on - strand, within CA264_15890at 3708.968 kb on - strand, within CA264_15890at 3708.968 kb on - strand, within CA264_15890at 3708.968 kb on - strand, within CA264_15890at 3709.005 kb on + strand, within CA264_15890at 3709.006 kb on - strand, within CA264_15890at 3709.020 kb on - strand, within CA264_15890at 3709.106 kb on + strand, within CA264_15890at 3709.106 kb on + strand, within CA264_15890at 3709.127 kb on + strand, within CA264_15890at 3709.128 kb on - strand, within CA264_15890at 3709.132 kb on - strand, within CA264_15890at 3709.179 kb on - strandat 3709.533 kb on + strand, within CA264_15895at 3709.534 kb on - strand, within CA264_15895at 3709.653 kb on + strand, within CA264_15895at 3709.702 kb on + strand, within CA264_15895at 3709.834 kb on - strand, within CA264_15895at 3709.906 kb on + strand, within CA264_15895at 3709.907 kb on - strand, within CA264_15895at 3709.907 kb on - strand, within CA264_15895at 3709.907 kb on - strand, within CA264_15895at 3709.917 kb on + strand, within CA264_15895at 3709.917 kb on + strand, within CA264_15895at 3709.918 kb on - strand, within CA264_15895at 3709.951 kb on - strand, within CA264_15895at 3709.982 kb on + strand, within CA264_15895at 3709.997 kb on + strand, within CA264_15895at 3710.001 kb on + strand, within CA264_15895at 3710.028 kb on - strand, within CA264_15895at 3710.138 kb on + strand, within CA264_15895at 3710.150 kb on + strand, within CA264_15895at 3710.176 kb on - strand, within CA264_15895at 3710.176 kb on - strand, within CA264_15895at 3710.176 kb on - strand, within CA264_15895at 3710.176 kb on - strand, within CA264_15895at 3710.179 kb on + strand, within CA264_15895at 3710.179 kb on + strand, within CA264_15895at 3710.179 kb on + strand, within CA264_15895at 3710.180 kb on - strand, within CA264_15895at 3710.180 kb on - strand, within CA264_15895at 3710.243 kb on + strand, within CA264_15895at 3710.328 kb on - strand, within CA264_15895at 3710.328 kb on - strand, within CA264_15895at 3710.339 kb on + strand, within CA264_15895at 3710.340 kb on - strand, within CA264_15895at 3710.340 kb on - strand, within CA264_15895at 3710.378 kb on - strand, within CA264_15895at 3710.378 kb on - strand, within CA264_15895at 3710.448 kb on + strandat 3710.449 kb on - strandat 3710.452 kb on + strandat 3710.453 kb on - strandat 3710.473 kb on - strandat 3710.586 kb on + strandat 3710.587 kb on - strandat 3710.589 kb on + strandat 3710.589 kb on + strandat 3710.589 kb on + strandat 3710.590 kb on - strandat 3710.590 kb on - strandat 3710.590 kb on - strandat 3710.590 kb on - strandat 3710.592 kb on - strandat 3710.592 kb on - strandat 3710.594 kb on - strandat 3710.594 kb on - strandat 3710.594 kb on - strandat 3710.602 kb on - strandat 3710.605 kb on + strandat 3710.605 kb on + strandat 3710.606 kb on - strandat 3710.606 kb on - strandat 3710.607 kb on + strandat 3710.608 kb on - strandat 3710.616 kb on - strandat 3710.616 kb on - strandat 3710.768 kb on + strand, within CA264_15900at 3710.768 kb on + strand, within CA264_15900at 3710.769 kb on - strand, within CA264_15900at 3710.769 kb on - strand, within CA264_15900at 3710.769 kb on - strand, within CA264_15900at 3710.804 kb on + strand, within CA264_15900at 3710.805 kb on - strand, within CA264_15900at 3710.870 kb on + strand, within CA264_15900at 3710.882 kb on + strand, within CA264_15900at 3710.882 kb on + strand, within CA264_15900at 3710.885 kb on + strand, within CA264_15900at 3710.923 kb on + strand, within CA264_15900at 3710.923 kb on + strand, within CA264_15900at 3710.924 kb on - strand, within CA264_15900at 3710.924 kb on - strand, within CA264_15900at 3710.949 kb on + strand, within CA264_15900at 3710.990 kb on + strand, within CA264_15900at 3710.991 kb on - strand, within CA264_15900at 3711.033 kb on - strand, within CA264_15900at 3711.082 kb on - strand, within CA264_15900at 3711.086 kb on + strand, within CA264_15900at 3711.086 kb on + strand, within CA264_15900at 3711.087 kb on - strand, within CA264_15900at 3711.127 kb on - strand, within CA264_15900at 3711.130 kb on + strand, within CA264_15900at 3711.285 kb on - strandat 3711.285 kb on - strandat 3711.285 kb on - strandat 3711.317 kb on - strandat 3711.382 kb on + strandat 3711.382 kb on + strandat 3711.384 kb on + strandat 3711.384 kb on + strandat 3711.384 kb on + strandat 3711.386 kb on + strandat 3711.387 kb on - strandat 3711.387 kb on - strandat 3711.393 kb on + strandat 3711.393 kb on + strandat 3711.409 kb on - strandat 3711.460 kb on - strandat 3711.460 kb on - strandat 3711.460 kb on - strandat 3711.465 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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3,708,654 + +0.4
3,708,655 - +0.1
3,708,664 - +1.2
3,708,719 + -0.4
3,708,720 - +0.3
3,708,745 + -0.6
3,708,767 - -1.7
3,708,796 + -1.0
3,708,799 - +0.3
3,708,833 + +0.0
3,708,834 - +0.9
3,708,842 + -0.3
3,708,867 - +0.0
3,708,872 + -0.6
3,708,873 - -0.3
3,708,874 + -0.1
3,708,874 + +0.6
3,708,875 - +0.0
3,708,968 - CA264_15890 0.31 +1.1
3,708,968 - CA264_15890 0.31 -0.4
3,708,968 - CA264_15890 0.31 -0.6
3,708,968 - CA264_15890 0.31 -0.1
3,709,005 + CA264_15890 0.43 -0.0
3,709,006 - CA264_15890 0.43 -0.1
3,709,020 - CA264_15890 0.48 -0.7
3,709,106 + CA264_15890 0.77 +0.5
3,709,106 + CA264_15890 0.77 +0.2
3,709,127 + CA264_15890 0.84 +0.4
3,709,128 - CA264_15890 0.85 -0.7
3,709,132 - CA264_15890 0.86 -0.3
3,709,179 - +0.1
3,709,533 + CA264_15895 0.13 -0.1
3,709,534 - CA264_15895 0.13 +0.4
3,709,653 + CA264_15895 0.24 -0.7
3,709,702 + CA264_15895 0.28 -0.3
3,709,834 - CA264_15895 0.39 -0.0
3,709,906 + CA264_15895 0.45 -0.6
3,709,907 - CA264_15895 0.45 -1.0
3,709,907 - CA264_15895 0.45 +0.1
3,709,907 - CA264_15895 0.45 -0.3
3,709,917 + CA264_15895 0.46 -0.5
3,709,917 + CA264_15895 0.46 -0.0
3,709,918 - CA264_15895 0.46 -0.7
3,709,951 - CA264_15895 0.49 -0.3
3,709,982 + CA264_15895 0.52 +0.2
3,709,997 + CA264_15895 0.53 -0.2
3,710,001 + CA264_15895 0.54 +0.6
3,710,028 - CA264_15895 0.56 -0.3
3,710,138 + CA264_15895 0.65 -1.0
3,710,150 + CA264_15895 0.66 +0.1
3,710,176 - CA264_15895 0.69 +0.3
3,710,176 - CA264_15895 0.69 +0.8
3,710,176 - CA264_15895 0.69 +0.6
3,710,176 - CA264_15895 0.69 -0.1
3,710,179 + CA264_15895 0.69 -1.1
3,710,179 + CA264_15895 0.69 +0.2
3,710,179 + CA264_15895 0.69 +0.5
3,710,180 - CA264_15895 0.69 -0.8
3,710,180 - CA264_15895 0.69 -1.3
3,710,243 + CA264_15895 0.74 -0.8
3,710,328 - CA264_15895 0.82 -0.2
3,710,328 - CA264_15895 0.82 -0.3
3,710,339 + CA264_15895 0.83 +0.5
3,710,340 - CA264_15895 0.83 +0.8
3,710,340 - CA264_15895 0.83 -0.1
3,710,378 - CA264_15895 0.86 +0.4
3,710,378 - CA264_15895 0.86 -0.4
3,710,448 + -1.3
3,710,449 - +0.4
3,710,452 + -2.3
3,710,453 - -0.8
3,710,473 - -0.1
3,710,586 + -0.5
3,710,587 - +0.5
3,710,589 + +0.0
3,710,589 + +0.9
3,710,589 + +1.2
3,710,590 - +0.0
3,710,590 - +0.2
3,710,590 - -0.6
3,710,590 - -0.1
3,710,592 - +0.0
3,710,592 - -0.3
3,710,594 - -0.1
3,710,594 - +1.3
3,710,594 - +0.8
3,710,602 - +0.4
3,710,605 + -0.4
3,710,605 + -0.8
3,710,606 - +0.2
3,710,606 - -0.1
3,710,607 + +0.0
3,710,608 - +0.3
3,710,616 - -0.0
3,710,616 - +0.4
3,710,768 + CA264_15900 0.18 +0.5
3,710,768 + CA264_15900 0.18 -1.2
3,710,769 - CA264_15900 0.18 -0.2
3,710,769 - CA264_15900 0.18 +0.7
3,710,769 - CA264_15900 0.18 -1.1
3,710,804 + CA264_15900 0.23 -0.5
3,710,805 - CA264_15900 0.23 -0.1
3,710,870 + CA264_15900 0.33 +0.1
3,710,882 + CA264_15900 0.34 -0.4
3,710,882 + CA264_15900 0.34 -0.8
3,710,885 + CA264_15900 0.35 -0.2
3,710,923 + CA264_15900 0.40 -0.4
3,710,923 + CA264_15900 0.40 +0.2
3,710,924 - CA264_15900 0.40 -0.2
3,710,924 - CA264_15900 0.40 +0.9
3,710,949 + CA264_15900 0.44 +0.2
3,710,990 + CA264_15900 0.50 -2.2
3,710,991 - CA264_15900 0.50 +0.1
3,711,033 - CA264_15900 0.56 +0.3
3,711,082 - CA264_15900 0.64 -0.8
3,711,086 + CA264_15900 0.64 -0.1
3,711,086 + CA264_15900 0.64 -0.1
3,711,087 - CA264_15900 0.64 -0.1
3,711,127 - CA264_15900 0.70 -1.4
3,711,130 + CA264_15900 0.71 +0.9
3,711,285 - -0.6
3,711,285 - -0.4
3,711,285 - +0.0
3,711,317 - -0.9
3,711,382 + +0.8
3,711,382 + +0.5
3,711,384 + -0.2
3,711,384 + -0.3
3,711,384 + -0.4
3,711,386 + -0.1
3,711,387 - +0.9
3,711,387 - -0.6
3,711,393 + -0.2
3,711,393 + -0.7
3,711,409 - -0.3
3,711,460 - +0.0
3,711,460 - +0.2
3,711,460 - +0.9
3,711,465 + +0.6

Or see this region's nucleotide sequence