Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14885

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14875 and CA264_14880 are separated by 49 nucleotidesCA264_14880 and CA264_14885 are separated by 8 nucleotidesCA264_14885 and CA264_14890 are separated by 90 nucleotides CA264_14875: CA264_14875 - hypothetical protein, at 3,492,933 to 3,497,735 _14875 CA264_14880: CA264_14880 - 50S ribosomal protein L11 methyltransferase, at 3,497,785 to 3,498,612 _14880 CA264_14885: CA264_14885 - hypothetical protein, at 3,498,621 to 3,498,980 _14885 CA264_14890: CA264_14890 - triose-phosphate isomerase, at 3,499,071 to 3,499,832 _14890 Position (kb) 3498 3499Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3497.625 kb on + strandat 3497.625 kb on + strandat 3497.626 kb on - strandat 3497.637 kb on + strandat 3497.638 kb on - strandat 3497.787 kb on - strandat 3497.787 kb on - strandat 3497.787 kb on - strandat 3497.837 kb on + strandat 3497.838 kb on - strandat 3497.940 kb on - strand, within CA264_14880at 3497.986 kb on + strand, within CA264_14880at 3497.987 kb on - strand, within CA264_14880at 3497.987 kb on - strand, within CA264_14880at 3497.988 kb on + strand, within CA264_14880at 3497.989 kb on - strand, within CA264_14880at 3497.989 kb on - strand, within CA264_14880at 3498.043 kb on + strand, within CA264_14880at 3498.043 kb on + strand, within CA264_14880at 3498.043 kb on + strand, within CA264_14880at 3498.045 kb on + strand, within CA264_14880at 3498.046 kb on - strand, within CA264_14880at 3498.053 kb on + strand, within CA264_14880at 3498.053 kb on + strand, within CA264_14880at 3498.053 kb on + strand, within CA264_14880at 3498.053 kb on + strand, within CA264_14880at 3498.053 kb on + strand, within CA264_14880at 3498.054 kb on - strand, within CA264_14880at 3498.054 kb on - strand, within CA264_14880at 3498.054 kb on - strand, within CA264_14880at 3498.054 kb on - strand, within CA264_14880at 3498.054 kb on - strand, within CA264_14880at 3498.416 kb on + strand, within CA264_14880at 3498.421 kb on + strand, within CA264_14880at 3498.422 kb on - strand, within CA264_14880at 3498.475 kb on - strand, within CA264_14880at 3498.475 kb on - strand, within CA264_14880at 3498.477 kb on - strand, within CA264_14880at 3498.477 kb on - strand, within CA264_14880at 3498.477 kb on - strand, within CA264_14880at 3498.495 kb on - strand, within CA264_14880at 3498.583 kb on + strandat 3498.583 kb on + strandat 3498.583 kb on + strandat 3498.595 kb on + strandat 3498.604 kb on - strandat 3498.615 kb on + strandat 3498.616 kb on - strandat 3498.616 kb on - strandat 3498.696 kb on + strand, within CA264_14885at 3498.696 kb on + strand, within CA264_14885at 3498.701 kb on - strand, within CA264_14885at 3498.701 kb on - strand, within CA264_14885at 3498.728 kb on + strand, within CA264_14885at 3498.850 kb on + strand, within CA264_14885at 3498.970 kb on - strandat 3498.973 kb on - strandat 3498.980 kb on + strandat 3498.982 kb on + strandat 3499.057 kb on + strandat 3499.062 kb on + strandat 3499.335 kb on + strand, within CA264_14890at 3499.653 kb on - strand, within CA264_14890at 3499.838 kb on - strandat 3499.840 kb on + strandat 3499.840 kb on - strandat 3499.859 kb on + strandat 3499.859 kb on + strandat 3499.860 kb on - strandat 3499.861 kb on + strandat 3499.898 kb on + strandat 3499.898 kb on + strandat 3499.899 kb on - strandat 3499.913 kb on + strandat 3499.914 kb on - strandat 3499.914 kb on - strandat 3499.928 kb on - strandat 3499.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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3,497,625 + -1.2
3,497,625 + -1.2
3,497,626 - +1.2
3,497,637 + -0.3
3,497,638 - +0.5
3,497,787 - +0.5
3,497,787 - +0.9
3,497,787 - +0.7
3,497,837 + -1.6
3,497,838 - -0.1
3,497,940 - CA264_14880 0.19 -0.1
3,497,986 + CA264_14880 0.24 +0.6
3,497,987 - CA264_14880 0.24 -0.3
3,497,987 - CA264_14880 0.24 -0.3
3,497,988 + CA264_14880 0.25 -0.2
3,497,989 - CA264_14880 0.25 +0.0
3,497,989 - CA264_14880 0.25 -0.9
3,498,043 + CA264_14880 0.31 +0.6
3,498,043 + CA264_14880 0.31 -0.3
3,498,043 + CA264_14880 0.31 -0.2
3,498,045 + CA264_14880 0.31 +0.2
3,498,046 - CA264_14880 0.32 +0.1
3,498,053 + CA264_14880 0.32 -0.5
3,498,053 + CA264_14880 0.32 +0.4
3,498,053 + CA264_14880 0.32 +0.1
3,498,053 + CA264_14880 0.32 -0.5
3,498,053 + CA264_14880 0.32 +0.7
3,498,054 - CA264_14880 0.32 -1.0
3,498,054 - CA264_14880 0.32 +0.1
3,498,054 - CA264_14880 0.32 -0.1
3,498,054 - CA264_14880 0.32 +0.9
3,498,054 - CA264_14880 0.32 -0.2
3,498,416 + CA264_14880 0.76 -0.4
3,498,421 + CA264_14880 0.77 -0.0
3,498,422 - CA264_14880 0.77 +0.4
3,498,475 - CA264_14880 0.83 -0.6
3,498,475 - CA264_14880 0.83 +0.5
3,498,477 - CA264_14880 0.84 +0.1
3,498,477 - CA264_14880 0.84 +0.5
3,498,477 - CA264_14880 0.84 +0.0
3,498,495 - CA264_14880 0.86 +0.8
3,498,583 + +0.5
3,498,583 + -0.9
3,498,583 + +1.5
3,498,595 + +0.1
3,498,604 - +0.1
3,498,615 + +0.1
3,498,616 - -0.9
3,498,616 - +1.4
3,498,696 + CA264_14885 0.21 +0.8
3,498,696 + CA264_14885 0.21 +0.9
3,498,701 - CA264_14885 0.22 -0.1
3,498,701 - CA264_14885 0.22 +0.1
3,498,728 + CA264_14885 0.30 +0.2
3,498,850 + CA264_14885 0.64 -0.5
3,498,970 - +1.0
3,498,973 - -0.6
3,498,980 + -0.1
3,498,982 + -0.1
3,499,057 + -1.4
3,499,062 + +0.2
3,499,335 + CA264_14890 0.35 -1.9
3,499,653 - CA264_14890 0.76 -3.8
3,499,838 - +1.5
3,499,840 + +0.2
3,499,840 - +0.4
3,499,859 + +1.3
3,499,859 + -0.7
3,499,860 - +0.7
3,499,861 + -0.0
3,499,898 + +0.8
3,499,898 + -0.1
3,499,899 - +0.0
3,499,913 + -0.1
3,499,914 - -0.6
3,499,914 - +0.3
3,499,928 - +0.0
3,499,946 - -0.0

Or see this region's nucleotide sequence