Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12685

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12680 and CA264_12685 are separated by 157 nucleotidesCA264_12685 and CA264_12690 are separated by 246 nucleotidesCA264_12690 and CA264_12695 are separated by 111 nucleotides CA264_12680: CA264_12680 - hypothetical protein, at 2,958,284 to 2,959,918 _12680 CA264_12685: CA264_12685 - hypothetical protein, at 2,960,076 to 2,960,261 _12685 CA264_12690: CA264_12690 - tRNA-Leu, at 2,960,508 to 2,960,589 _12690 CA264_12695: CA264_12695 - phosphatase PAP2 family protein, at 2,960,701 to 2,961,420 _12695 Position (kb) 2960 2961Strain fitness (log2 ratio) -2 -1 0 1 2at 2959.076 kb on + strand, within CA264_12680at 2959.119 kb on + strand, within CA264_12680at 2959.119 kb on + strand, within CA264_12680at 2959.119 kb on + strand, within CA264_12680at 2959.119 kb on + strand, within CA264_12680at 2959.120 kb on - strand, within CA264_12680at 2959.177 kb on + strand, within CA264_12680at 2959.231 kb on + strand, within CA264_12680at 2959.341 kb on - strand, within CA264_12680at 2959.522 kb on - strand, within CA264_12680at 2959.583 kb on - strand, within CA264_12680at 2959.583 kb on - strand, within CA264_12680at 2959.606 kb on + strand, within CA264_12680at 2959.607 kb on - strand, within CA264_12680at 2959.629 kb on + strand, within CA264_12680at 2959.630 kb on - strand, within CA264_12680at 2959.630 kb on - strand, within CA264_12680at 2959.630 kb on - strand, within CA264_12680at 2959.630 kb on - strand, within CA264_12680at 2959.630 kb on - strand, within CA264_12680at 2959.634 kb on + strand, within CA264_12680at 2959.806 kb on + strandat 2959.831 kb on - strandat 2959.914 kb on - strandat 2959.914 kb on - strandat 2959.917 kb on - strandat 2959.957 kb on + strandat 2959.958 kb on - strandat 2959.992 kb on + strandat 2960.070 kb on - strandat 2960.129 kb on + strand, within CA264_12685at 2960.171 kb on + strand, within CA264_12685at 2960.171 kb on + strand, within CA264_12685at 2960.171 kb on + strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.172 kb on - strand, within CA264_12685at 2960.173 kb on + strand, within CA264_12685at 2960.173 kb on + strand, within CA264_12685at 2960.174 kb on - strand, within CA264_12685at 2960.230 kb on + strand, within CA264_12685at 2960.230 kb on + strand, within CA264_12685at 2960.231 kb on - strand, within CA264_12685at 2960.231 kb on - strand, within CA264_12685at 2960.341 kb on - strandat 2960.341 kb on - strandat 2960.373 kb on - strandat 2960.497 kb on - strandat 2960.497 kb on - strandat 2960.599 kb on + strandat 2960.600 kb on - strandat 2960.601 kb on + strandat 2960.602 kb on - strandat 2960.784 kb on + strand, within CA264_12695at 2960.840 kb on + strand, within CA264_12695at 2960.845 kb on + strand, within CA264_12695at 2960.889 kb on + strand, within CA264_12695at 2960.985 kb on + strand, within CA264_12695at 2961.060 kb on - strand, within CA264_12695at 2961.084 kb on + strand, within CA264_12695at 2961.146 kb on + strand, within CA264_12695at 2961.146 kb on + strand, within CA264_12695at 2961.147 kb on - strand, within CA264_12695at 2961.147 kb on - strand, within CA264_12695at 2961.149 kb on + strand, within CA264_12695at 2961.216 kb on + strand, within CA264_12695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,959,076 + CA264_12680 0.48 +0.1
2,959,119 + CA264_12680 0.51 -0.9
2,959,119 + CA264_12680 0.51 -0.8
2,959,119 + CA264_12680 0.51 -0.7
2,959,119 + CA264_12680 0.51 +0.1
2,959,120 - CA264_12680 0.51 +0.2
2,959,177 + CA264_12680 0.55 +0.1
2,959,231 + CA264_12680 0.58 -2.4
2,959,341 - CA264_12680 0.65 -0.5
2,959,522 - CA264_12680 0.76 +0.1
2,959,583 - CA264_12680 0.79 -0.4
2,959,583 - CA264_12680 0.79 -0.2
2,959,606 + CA264_12680 0.81 -0.6
2,959,607 - CA264_12680 0.81 +2.0
2,959,629 + CA264_12680 0.82 -0.0
2,959,630 - CA264_12680 0.82 +0.5
2,959,630 - CA264_12680 0.82 -0.2
2,959,630 - CA264_12680 0.82 -0.2
2,959,630 - CA264_12680 0.82 +0.0
2,959,630 - CA264_12680 0.82 -0.2
2,959,634 + CA264_12680 0.83 -1.1
2,959,806 + -0.2
2,959,831 - -1.9
2,959,914 - +0.0
2,959,914 - -0.2
2,959,917 - -0.4
2,959,957 + -1.0
2,959,958 - +1.2
2,959,992 + -0.4
2,960,070 - +0.6
2,960,129 + CA264_12685 0.28 -0.5
2,960,171 + CA264_12685 0.51 +0.1
2,960,171 + CA264_12685 0.51 -0.4
2,960,171 + CA264_12685 0.51 -0.1
2,960,172 - CA264_12685 0.52 +0.7
2,960,172 - CA264_12685 0.52 -0.2
2,960,172 - CA264_12685 0.52 +0.8
2,960,172 - CA264_12685 0.52 -0.6
2,960,173 + CA264_12685 0.52 +0.4
2,960,173 + CA264_12685 0.52 +0.2
2,960,174 - CA264_12685 0.53 +0.8
2,960,230 + CA264_12685 0.83 +0.1
2,960,230 + CA264_12685 0.83 -0.1
2,960,231 - CA264_12685 0.83 +0.6
2,960,231 - CA264_12685 0.83 +0.8
2,960,341 - +0.9
2,960,341 - +0.0
2,960,373 - -0.4
2,960,497 - +0.1
2,960,497 - -0.7
2,960,599 + +0.2
2,960,600 - +0.1
2,960,601 + -0.1
2,960,602 - +0.1
2,960,784 + CA264_12695 0.12 +0.0
2,960,840 + CA264_12695 0.19 +0.2
2,960,845 + CA264_12695 0.20 -0.9
2,960,889 + CA264_12695 0.26 -0.9
2,960,985 + CA264_12695 0.39 -0.6
2,961,060 - CA264_12695 0.50 +0.2
2,961,084 + CA264_12695 0.53 +0.0
2,961,146 + CA264_12695 0.62 +0.3
2,961,146 + CA264_12695 0.62 +0.1
2,961,147 - CA264_12695 0.62 +1.2
2,961,147 - CA264_12695 0.62 +0.5
2,961,149 + CA264_12695 0.62 +0.3
2,961,216 + CA264_12695 0.72 -1.3

Or see this region's nucleotide sequence