Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12630

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12620 and CA264_12625 are separated by 116 nucleotidesCA264_12625 and CA264_12630 are separated by 169 nucleotidesCA264_12630 and CA264_12635 are separated by 0 nucleotides CA264_12620: CA264_12620 - cytochrome C, at 2,945,665 to 2,946,663 _12620 CA264_12625: CA264_12625 - RDD family protein, at 2,946,780 to 2,947,250 _12625 CA264_12630: CA264_12630 - RDD family protein, at 2,947,420 to 2,947,851 _12630 CA264_12635: CA264_12635 - hypothetical protein, at 2,947,852 to 2,949,132 _12635 Position (kb) 2947 2948Strain fitness (log2 ratio) -1 0 1 2at 2946.487 kb on + strand, within CA264_12620at 2946.487 kb on + strand, within CA264_12620at 2946.595 kb on + strandat 2946.602 kb on - strandat 2946.602 kb on - strandat 2946.622 kb on - strandat 2946.645 kb on + strandat 2946.689 kb on + strandat 2946.690 kb on - strandat 2946.690 kb on - strandat 2946.751 kb on + strandat 2946.751 kb on + strandat 2946.774 kb on - strandat 2946.774 kb on - strandat 2946.774 kb on - strandat 2946.776 kb on + strandat 2946.776 kb on + strandat 2946.776 kb on + strandat 2946.829 kb on - strand, within CA264_12625at 2946.996 kb on + strand, within CA264_12625at 2947.139 kb on + strand, within CA264_12625at 2947.139 kb on + strand, within CA264_12625at 2947.212 kb on - strandat 2947.248 kb on + strandat 2947.249 kb on - strandat 2947.275 kb on - strandat 2947.313 kb on + strandat 2947.330 kb on + strandat 2947.336 kb on - strandat 2947.339 kb on + strandat 2947.339 kb on + strandat 2947.339 kb on + strandat 2947.339 kb on + strandat 2947.339 kb on + strandat 2947.340 kb on - strandat 2947.372 kb on - strandat 2947.383 kb on + strandat 2947.389 kb on + strandat 2947.419 kb on + strandat 2947.433 kb on - strandat 2947.433 kb on - strandat 2947.469 kb on + strand, within CA264_12630at 2947.524 kb on - strand, within CA264_12630at 2947.540 kb on + strand, within CA264_12630at 2947.541 kb on - strand, within CA264_12630at 2947.614 kb on - strand, within CA264_12630at 2947.615 kb on + strand, within CA264_12630at 2947.850 kb on - strandat 2947.878 kb on - strandat 2947.940 kb on + strandat 2947.940 kb on + strandat 2947.941 kb on - strandat 2947.941 kb on - strandat 2947.945 kb on + strandat 2947.945 kb on + strandat 2947.946 kb on - strandat 2947.946 kb on - strandat 2947.946 kb on - strandat 2947.946 kb on - strandat 2947.948 kb on - strandat 2947.981 kb on + strand, within CA264_12635at 2948.001 kb on - strand, within CA264_12635at 2948.006 kb on + strand, within CA264_12635at 2948.052 kb on + strand, within CA264_12635at 2948.065 kb on + strand, within CA264_12635at 2948.066 kb on - strand, within CA264_12635at 2948.080 kb on + strand, within CA264_12635at 2948.081 kb on - strand, within CA264_12635at 2948.121 kb on + strand, within CA264_12635at 2948.223 kb on + strand, within CA264_12635at 2948.231 kb on + strand, within CA264_12635at 2948.232 kb on - strand, within CA264_12635at 2948.238 kb on + strand, within CA264_12635at 2948.238 kb on + strand, within CA264_12635at 2948.264 kb on - strand, within CA264_12635at 2948.269 kb on + strand, within CA264_12635at 2948.269 kb on + strand, within CA264_12635at 2948.270 kb on - strand, within CA264_12635at 2948.270 kb on - strand, within CA264_12635at 2948.275 kb on - strand, within CA264_12635at 2948.400 kb on + strand, within CA264_12635at 2948.431 kb on - strand, within CA264_12635at 2948.474 kb on - strand, within CA264_12635at 2948.580 kb on + strand, within CA264_12635at 2948.598 kb on - strand, within CA264_12635at 2948.683 kb on + strand, within CA264_12635at 2948.697 kb on + strand, within CA264_12635at 2948.698 kb on - strand, within CA264_12635at 2948.745 kb on - strand, within CA264_12635at 2948.759 kb on + strand, within CA264_12635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,946,487 + CA264_12620 0.82 +0.8
2,946,487 + CA264_12620 0.82 -0.1
2,946,595 + +0.4
2,946,602 - +0.2
2,946,602 - -0.2
2,946,622 - -0.9
2,946,645 + +0.1
2,946,689 + +0.1
2,946,690 - -0.5
2,946,690 - +0.4
2,946,751 + -0.2
2,946,751 + -1.7
2,946,774 - -0.3
2,946,774 - +1.1
2,946,774 - +0.4
2,946,776 + +0.1
2,946,776 + -0.3
2,946,776 + -0.6
2,946,829 - CA264_12625 0.10 +1.0
2,946,996 + CA264_12625 0.46 +0.9
2,947,139 + CA264_12625 0.76 +1.5
2,947,139 + CA264_12625 0.76 -0.4
2,947,212 - +0.1
2,947,248 + -0.5
2,947,249 - -0.3
2,947,275 - -0.3
2,947,313 + +0.1
2,947,330 + +0.1
2,947,336 - -0.4
2,947,339 + -1.3
2,947,339 + -0.2
2,947,339 + -0.7
2,947,339 + +0.1
2,947,339 + +0.1
2,947,340 - +0.1
2,947,372 - +0.4
2,947,383 + -0.2
2,947,389 + -0.1
2,947,419 + +0.4
2,947,433 - -0.4
2,947,433 - +0.1
2,947,469 + CA264_12630 0.11 -0.1
2,947,524 - CA264_12630 0.24 -0.4
2,947,540 + CA264_12630 0.28 +1.1
2,947,541 - CA264_12630 0.28 -0.2
2,947,614 - CA264_12630 0.45 -0.3
2,947,615 + CA264_12630 0.45 +0.1
2,947,850 - +0.3
2,947,878 - +1.8
2,947,940 + -0.1
2,947,940 + +0.2
2,947,941 - -1.0
2,947,941 - -0.5
2,947,945 + +1.3
2,947,945 + -0.2
2,947,946 - -0.8
2,947,946 - -0.2
2,947,946 - -0.4
2,947,946 - -0.5
2,947,948 - -0.8
2,947,981 + CA264_12635 0.10 -0.3
2,948,001 - CA264_12635 0.12 -0.6
2,948,006 + CA264_12635 0.12 +0.8
2,948,052 + CA264_12635 0.16 -0.6
2,948,065 + CA264_12635 0.17 +1.6
2,948,066 - CA264_12635 0.17 -0.9
2,948,080 + CA264_12635 0.18 -0.6
2,948,081 - CA264_12635 0.18 +0.4
2,948,121 + CA264_12635 0.21 -0.4
2,948,223 + CA264_12635 0.29 +0.7
2,948,231 + CA264_12635 0.30 +0.6
2,948,232 - CA264_12635 0.30 -0.5
2,948,238 + CA264_12635 0.30 +0.4
2,948,238 + CA264_12635 0.30 -0.7
2,948,264 - CA264_12635 0.32 +1.2
2,948,269 + CA264_12635 0.33 +0.5
2,948,269 + CA264_12635 0.33 -0.5
2,948,270 - CA264_12635 0.33 -0.8
2,948,270 - CA264_12635 0.33 -1.2
2,948,275 - CA264_12635 0.33 +0.7
2,948,400 + CA264_12635 0.43 -1.2
2,948,431 - CA264_12635 0.45 -0.2
2,948,474 - CA264_12635 0.49 -0.4
2,948,580 + CA264_12635 0.57 -0.4
2,948,598 - CA264_12635 0.58 +0.2
2,948,683 + CA264_12635 0.65 -0.6
2,948,697 + CA264_12635 0.66 +0.1
2,948,698 - CA264_12635 0.66 +0.3
2,948,745 - CA264_12635 0.70 -0.1
2,948,759 + CA264_12635 0.71 +1.2

Or see this region's nucleotide sequence