Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10930

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10920 and CA264_10925 overlap by 20 nucleotidesCA264_10925 and CA264_10930 are separated by 50 nucleotidesCA264_10930 and CA264_10935 are separated by 243 nucleotidesCA264_10935 and CA264_10940 are separated by 73 nucleotides CA264_10920: CA264_10920 - helix-turn-helix-type transcriptional regulator, at 2,521,401 to 2,522,276 _10920 CA264_10925: CA264_10925 - fatty acid hydroxylase, at 2,522,257 to 2,522,748 _10925 CA264_10930: CA264_10930 - methylglutaconyl-CoA hydratase, at 2,522,799 to 2,523,608 _10930 CA264_10935: CA264_10935 - TetR family transcriptional regulator, at 2,523,852 to 2,524,472 _10935 CA264_10940: CA264_10940 - phenylacetate-CoA oxygenase subunit PaaA, at 2,524,546 to 2,525,532 _10940 Position (kb) 2522 2523 2524Strain fitness (log2 ratio) -2 -1 0 1at 2521.822 kb on - strand, within CA264_10920at 2521.844 kb on + strand, within CA264_10920at 2522.034 kb on + strand, within CA264_10920at 2522.085 kb on - strand, within CA264_10920at 2522.096 kb on - strand, within CA264_10920at 2522.120 kb on + strand, within CA264_10920at 2522.120 kb on + strand, within CA264_10920at 2522.121 kb on - strand, within CA264_10920at 2522.155 kb on + strand, within CA264_10920at 2522.192 kb on + strandat 2522.193 kb on - strandat 2522.222 kb on + strandat 2522.242 kb on - strandat 2522.258 kb on + strandat 2522.259 kb on - strandat 2522.261 kb on + strandat 2522.266 kb on + strandat 2522.266 kb on + strandat 2522.266 kb on + strandat 2522.305 kb on - strandat 2522.309 kb on + strand, within CA264_10925at 2522.427 kb on + strand, within CA264_10925at 2522.461 kb on + strand, within CA264_10925at 2522.499 kb on - strand, within CA264_10925at 2522.537 kb on - strand, within CA264_10925at 2522.583 kb on - strand, within CA264_10925at 2522.586 kb on - strand, within CA264_10925at 2522.748 kb on + strandat 2522.749 kb on - strandat 2522.752 kb on + strandat 2522.819 kb on + strandat 2522.820 kb on - strandat 2523.154 kb on - strand, within CA264_10930at 2523.154 kb on - strand, within CA264_10930at 2523.290 kb on + strand, within CA264_10930at 2523.290 kb on + strand, within CA264_10930at 2523.293 kb on - strand, within CA264_10930at 2523.532 kb on + strandat 2523.533 kb on - strandat 2523.580 kb on - strandat 2523.580 kb on - strandat 2523.612 kb on + strandat 2523.627 kb on - strandat 2523.658 kb on - strandat 2523.666 kb on - strandat 2523.667 kb on + strandat 2523.668 kb on - strandat 2523.852 kb on - strandat 2523.852 kb on - strandat 2523.884 kb on - strandat 2523.964 kb on + strand, within CA264_10935at 2524.029 kb on - strand, within CA264_10935at 2524.206 kb on + strand, within CA264_10935at 2524.227 kb on + strand, within CA264_10935at 2524.228 kb on - strand, within CA264_10935at 2524.228 kb on - strand, within CA264_10935at 2524.347 kb on + strand, within CA264_10935at 2524.347 kb on + strand, within CA264_10935at 2524.348 kb on - strand, within CA264_10935at 2524.350 kb on - strand, within CA264_10935at 2524.408 kb on + strand, within CA264_10935at 2524.409 kb on - strand, within CA264_10935at 2524.445 kb on + strandat 2524.460 kb on + strandat 2524.460 kb on + strandat 2524.463 kb on + strandat 2524.463 kb on + strandat 2524.470 kb on + strandat 2524.475 kb on - strandat 2524.531 kb on - strandat 2524.540 kb on + strandat 2524.540 kb on + strandat 2524.540 kb on + strandat 2524.540 kb on + strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.542 kb on + strandat 2524.542 kb on + strandat 2524.542 kb on + strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.545 kb on + strandat 2524.545 kb on + strandat 2524.545 kb on + strandat 2524.545 kb on + strandat 2524.546 kb on - strandat 2524.546 kb on - strandat 2524.546 kb on - strandat 2524.546 kb on - strandat 2524.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,521,822 - CA264_10920 0.48 -0.2
2,521,844 + CA264_10920 0.51 -0.7
2,522,034 + CA264_10920 0.72 +0.8
2,522,085 - CA264_10920 0.78 -0.5
2,522,096 - CA264_10920 0.79 -0.3
2,522,120 + CA264_10920 0.82 -0.2
2,522,120 + CA264_10920 0.82 -0.7
2,522,121 - CA264_10920 0.82 -0.4
2,522,155 + CA264_10920 0.86 +0.4
2,522,192 + -0.3
2,522,193 - -0.8
2,522,222 + -0.4
2,522,242 - -0.2
2,522,258 + -0.4
2,522,259 - -2.1
2,522,261 + -0.1
2,522,266 + -0.3
2,522,266 + -0.4
2,522,266 + +1.3
2,522,305 - +0.4
2,522,309 + CA264_10925 0.11 +0.0
2,522,427 + CA264_10925 0.35 +0.7
2,522,461 + CA264_10925 0.41 -1.0
2,522,499 - CA264_10925 0.49 -1.6
2,522,537 - CA264_10925 0.57 -1.1
2,522,583 - CA264_10925 0.66 -1.0
2,522,586 - CA264_10925 0.67 -0.8
2,522,748 + -0.4
2,522,749 - +0.6
2,522,752 + -0.9
2,522,819 + -1.5
2,522,820 - -1.0
2,523,154 - CA264_10930 0.44 -2.4
2,523,154 - CA264_10930 0.44 -2.6
2,523,290 + CA264_10930 0.61 +0.2
2,523,290 + CA264_10930 0.61 -1.8
2,523,293 - CA264_10930 0.61 -1.4
2,523,532 + -1.9
2,523,533 - -1.3
2,523,580 - -1.3
2,523,580 - -0.9
2,523,612 + -1.0
2,523,627 - -0.5
2,523,658 - -0.1
2,523,666 - -0.5
2,523,667 + -0.4
2,523,668 - -0.9
2,523,852 - +0.3
2,523,852 - -0.4
2,523,884 - -0.2
2,523,964 + CA264_10935 0.18 -0.0
2,524,029 - CA264_10935 0.29 -0.1
2,524,206 + CA264_10935 0.57 +0.1
2,524,227 + CA264_10935 0.60 -0.2
2,524,228 - CA264_10935 0.61 -1.9
2,524,228 - CA264_10935 0.61 -0.5
2,524,347 + CA264_10935 0.80 -0.1
2,524,347 + CA264_10935 0.80 +0.5
2,524,348 - CA264_10935 0.80 +0.0
2,524,350 - CA264_10935 0.80 +0.0
2,524,408 + CA264_10935 0.90 -0.5
2,524,409 - CA264_10935 0.90 -0.1
2,524,445 + -0.4
2,524,460 + +0.0
2,524,460 + +0.3
2,524,463 + +0.2
2,524,463 + -0.2
2,524,470 + -0.3
2,524,475 - +0.1
2,524,531 - +0.6
2,524,540 + +0.1
2,524,540 + +0.0
2,524,540 + -0.9
2,524,540 + -0.1
2,524,541 - +0.6
2,524,541 - +0.8
2,524,541 - +0.1
2,524,541 - -0.1
2,524,541 - -0.1
2,524,541 - -0.2
2,524,541 - +0.5
2,524,542 + -0.5
2,524,542 + +0.3
2,524,542 + +0.1
2,524,543 - -0.1
2,524,543 - +0.2
2,524,543 - +0.9
2,524,543 - -0.4
2,524,543 - +0.3
2,524,545 + +0.0
2,524,545 + +0.5
2,524,545 + +0.9
2,524,545 + -0.3
2,524,546 - -0.2
2,524,546 - +1.4
2,524,546 - -0.2
2,524,546 - +0.5
2,524,550 - -0.4

Or see this region's nucleotide sequence