Experiment: m.b. Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10920 and CA264_10925 overlap by 20 nucleotides CA264_10925 and CA264_10930 are separated by 50 nucleotides CA264_10930 and CA264_10935 are separated by 243 nucleotides CA264_10935 and CA264_10940 are separated by 73 nucleotides
CA264_10920: CA264_10920 - helix-turn-helix-type transcriptional regulator, at 2,521,401 to 2,522,276
_10920
CA264_10925: CA264_10925 - fatty acid hydroxylase, at 2,522,257 to 2,522,748
_10925
CA264_10930: CA264_10930 - methylglutaconyl-CoA hydratase, at 2,522,799 to 2,523,608
_10930
CA264_10935: CA264_10935 - TetR family transcriptional regulator, at 2,523,852 to 2,524,472
_10935
CA264_10940: CA264_10940 - phenylacetate-CoA oxygenase subunit PaaA, at 2,524,546 to 2,525,532
_10940
Position (kb)
2522
2523
2524 Strain fitness (log2 ratio)
-2
-1
0
1 at 2521.822 kb on - strand, within CA264_10920 at 2521.844 kb on + strand, within CA264_10920 at 2522.034 kb on + strand, within CA264_10920 at 2522.085 kb on - strand, within CA264_10920 at 2522.096 kb on - strand, within CA264_10920 at 2522.120 kb on + strand, within CA264_10920 at 2522.120 kb on + strand, within CA264_10920 at 2522.121 kb on - strand, within CA264_10920 at 2522.155 kb on + strand, within CA264_10920 at 2522.192 kb on + strand at 2522.193 kb on - strand at 2522.222 kb on + strand at 2522.242 kb on - strand at 2522.258 kb on + strand at 2522.259 kb on - strand at 2522.261 kb on + strand at 2522.266 kb on + strand at 2522.266 kb on + strand at 2522.266 kb on + strand at 2522.305 kb on - strand at 2522.309 kb on + strand, within CA264_10925 at 2522.427 kb on + strand, within CA264_10925 at 2522.461 kb on + strand, within CA264_10925 at 2522.499 kb on - strand, within CA264_10925 at 2522.537 kb on - strand, within CA264_10925 at 2522.583 kb on - strand, within CA264_10925 at 2522.586 kb on - strand, within CA264_10925 at 2522.748 kb on + strand at 2522.749 kb on - strand at 2522.752 kb on + strand at 2522.819 kb on + strand at 2522.820 kb on - strand at 2523.154 kb on - strand, within CA264_10930 at 2523.154 kb on - strand, within CA264_10930 at 2523.290 kb on + strand, within CA264_10930 at 2523.290 kb on + strand, within CA264_10930 at 2523.293 kb on - strand, within CA264_10930 at 2523.532 kb on + strand at 2523.533 kb on - strand at 2523.580 kb on - strand at 2523.580 kb on - strand at 2523.612 kb on + strand at 2523.627 kb on - strand at 2523.658 kb on - strand at 2523.666 kb on - strand at 2523.667 kb on + strand at 2523.668 kb on - strand at 2523.852 kb on - strand at 2523.852 kb on - strand at 2523.884 kb on - strand at 2523.964 kb on + strand, within CA264_10935 at 2524.029 kb on - strand, within CA264_10935 at 2524.206 kb on + strand, within CA264_10935 at 2524.227 kb on + strand, within CA264_10935 at 2524.228 kb on - strand, within CA264_10935 at 2524.228 kb on - strand, within CA264_10935 at 2524.347 kb on + strand, within CA264_10935 at 2524.347 kb on + strand, within CA264_10935 at 2524.348 kb on - strand, within CA264_10935 at 2524.350 kb on - strand, within CA264_10935 at 2524.408 kb on + strand, within CA264_10935 at 2524.409 kb on - strand, within CA264_10935 at 2524.445 kb on + strand at 2524.460 kb on + strand at 2524.460 kb on + strand at 2524.463 kb on + strand at 2524.463 kb on + strand at 2524.470 kb on + strand at 2524.475 kb on - strand at 2524.531 kb on - strand at 2524.540 kb on + strand at 2524.540 kb on + strand at 2524.540 kb on + strand at 2524.540 kb on + strand at 2524.541 kb on - strand at 2524.541 kb on - strand at 2524.541 kb on - strand at 2524.541 kb on - strand at 2524.541 kb on - strand at 2524.541 kb on - strand at 2524.541 kb on - strand at 2524.542 kb on + strand at 2524.542 kb on + strand at 2524.542 kb on + strand at 2524.543 kb on - strand at 2524.543 kb on - strand at 2524.543 kb on - strand at 2524.543 kb on - strand at 2524.543 kb on - strand at 2524.545 kb on + strand at 2524.545 kb on + strand at 2524.545 kb on + strand at 2524.545 kb on + strand at 2524.546 kb on - strand at 2524.546 kb on - strand at 2524.546 kb on - strand at 2524.546 kb on - strand at 2524.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM remove 2,521,822 - CA264_10920 0.48 -0.2 2,521,844 + CA264_10920 0.51 -0.7 2,522,034 + CA264_10920 0.72 +0.8 2,522,085 - CA264_10920 0.78 -0.5 2,522,096 - CA264_10920 0.79 -0.3 2,522,120 + CA264_10920 0.82 -0.2 2,522,120 + CA264_10920 0.82 -0.7 2,522,121 - CA264_10920 0.82 -0.4 2,522,155 + CA264_10920 0.86 +0.4 2,522,192 + -0.3 2,522,193 - -0.8 2,522,222 + -0.4 2,522,242 - -0.2 2,522,258 + -0.4 2,522,259 - -2.1 2,522,261 + -0.1 2,522,266 + -0.3 2,522,266 + -0.4 2,522,266 + +1.3 2,522,305 - +0.4 2,522,309 + CA264_10925 0.11 +0.0 2,522,427 + CA264_10925 0.35 +0.7 2,522,461 + CA264_10925 0.41 -1.0 2,522,499 - CA264_10925 0.49 -1.6 2,522,537 - CA264_10925 0.57 -1.1 2,522,583 - CA264_10925 0.66 -1.0 2,522,586 - CA264_10925 0.67 -0.8 2,522,748 + -0.4 2,522,749 - +0.6 2,522,752 + -0.9 2,522,819 + -1.5 2,522,820 - -1.0 2,523,154 - CA264_10930 0.44 -2.4 2,523,154 - CA264_10930 0.44 -2.6 2,523,290 + CA264_10930 0.61 +0.2 2,523,290 + CA264_10930 0.61 -1.8 2,523,293 - CA264_10930 0.61 -1.4 2,523,532 + -1.9 2,523,533 - -1.3 2,523,580 - -1.3 2,523,580 - -0.9 2,523,612 + -1.0 2,523,627 - -0.5 2,523,658 - -0.1 2,523,666 - -0.5 2,523,667 + -0.4 2,523,668 - -0.9 2,523,852 - +0.3 2,523,852 - -0.4 2,523,884 - -0.2 2,523,964 + CA264_10935 0.18 -0.0 2,524,029 - CA264_10935 0.29 -0.1 2,524,206 + CA264_10935 0.57 +0.1 2,524,227 + CA264_10935 0.60 -0.2 2,524,228 - CA264_10935 0.61 -1.9 2,524,228 - CA264_10935 0.61 -0.5 2,524,347 + CA264_10935 0.80 -0.1 2,524,347 + CA264_10935 0.80 +0.5 2,524,348 - CA264_10935 0.80 +0.0 2,524,350 - CA264_10935 0.80 +0.0 2,524,408 + CA264_10935 0.90 -0.5 2,524,409 - CA264_10935 0.90 -0.1 2,524,445 + -0.4 2,524,460 + +0.0 2,524,460 + +0.3 2,524,463 + +0.2 2,524,463 + -0.2 2,524,470 + -0.3 2,524,475 - +0.1 2,524,531 - +0.6 2,524,540 + +0.1 2,524,540 + +0.0 2,524,540 + -0.9 2,524,540 + -0.1 2,524,541 - +0.6 2,524,541 - +0.8 2,524,541 - +0.1 2,524,541 - -0.1 2,524,541 - -0.1 2,524,541 - -0.2 2,524,541 - +0.5 2,524,542 + -0.5 2,524,542 + +0.3 2,524,542 + +0.1 2,524,543 - -0.1 2,524,543 - +0.2 2,524,543 - +0.9 2,524,543 - -0.4 2,524,543 - +0.3 2,524,545 + +0.0 2,524,545 + +0.5 2,524,545 + +0.9 2,524,545 + -0.3 2,524,546 - -0.2 2,524,546 - +1.4 2,524,546 - -0.2 2,524,546 - +0.5 2,524,550 - -0.4
Or see this region's nucleotide sequence