Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10065

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10055 and CA264_10060 are separated by 35 nucleotidesCA264_10060 and CA264_10065 overlap by 32 nucleotidesCA264_10065 and CA264_10070 are separated by 402 nucleotides CA264_10055: CA264_10055 - hypothetical protein, at 2,333,408 to 2,334,052 _10055 CA264_10060: CA264_10060 - two-component sensor histidine kinase, at 2,334,088 to 2,334,921 _10060 CA264_10065: CA264_10065 - DNA-binding response regulator, at 2,334,890 to 2,335,522 _10065 CA264_10070: CA264_10070 - hypothetical protein, at 2,335,925 to 2,336,308 _10070 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -2 -1 0 1 2at 2333.890 kb on + strand, within CA264_10055at 2333.918 kb on - strand, within CA264_10055at 2333.918 kb on - strand, within CA264_10055at 2333.956 kb on - strand, within CA264_10055at 2333.960 kb on + strand, within CA264_10055at 2333.961 kb on - strand, within CA264_10055at 2333.995 kb on + strandat 2334.050 kb on + strandat 2334.168 kb on + strandat 2334.168 kb on + strandat 2334.327 kb on + strand, within CA264_10060at 2334.351 kb on - strand, within CA264_10060at 2334.355 kb on - strand, within CA264_10060at 2334.531 kb on - strand, within CA264_10060at 2334.569 kb on + strand, within CA264_10060at 2334.569 kb on + strand, within CA264_10060at 2334.570 kb on - strand, within CA264_10060at 2334.670 kb on + strand, within CA264_10060at 2334.860 kb on + strandat 2334.860 kb on + strandat 2334.861 kb on - strandat 2334.869 kb on - strandat 2334.883 kb on - strandat 2334.883 kb on - strandat 2334.889 kb on + strandat 2334.890 kb on - strandat 2334.975 kb on - strand, within CA264_10065at 2334.976 kb on + strand, within CA264_10065at 2334.976 kb on + strand, within CA264_10065at 2334.977 kb on - strand, within CA264_10065at 2334.977 kb on - strand, within CA264_10065at 2335.012 kb on + strand, within CA264_10065at 2335.123 kb on + strand, within CA264_10065at 2335.124 kb on - strand, within CA264_10065at 2335.124 kb on - strand, within CA264_10065at 2335.268 kb on + strand, within CA264_10065at 2335.269 kb on - strand, within CA264_10065at 2335.269 kb on - strand, within CA264_10065at 2335.269 kb on - strand, within CA264_10065at 2335.487 kb on + strandat 2335.488 kb on - strandat 2335.531 kb on + strandat 2335.600 kb on - strandat 2335.628 kb on + strandat 2335.628 kb on + strandat 2335.629 kb on - strandat 2335.641 kb on + strandat 2335.669 kb on - strandat 2335.721 kb on + strandat 2335.721 kb on + strandat 2335.731 kb on - strandat 2335.731 kb on - strandat 2335.733 kb on - strandat 2335.739 kb on + strandat 2335.739 kb on + strandat 2335.739 kb on + strandat 2335.740 kb on - strandat 2335.740 kb on - strandat 2335.749 kb on + strandat 2335.749 kb on + strandat 2335.749 kb on + strandat 2335.750 kb on - strandat 2335.853 kb on + strandat 2335.854 kb on - strandat 2335.854 kb on - strandat 2335.860 kb on - strandat 2335.860 kb on - strandat 2335.880 kb on - strandat 2335.880 kb on - strandat 2335.880 kb on - strandat 2335.927 kb on - strandat 2335.927 kb on - strandat 2335.936 kb on + strandat 2335.937 kb on - strandat 2336.057 kb on + strand, within CA264_10070at 2336.093 kb on + strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.094 kb on - strand, within CA264_10070at 2336.122 kb on + strand, within CA264_10070at 2336.123 kb on - strand, within CA264_10070at 2336.132 kb on - strand, within CA264_10070at 2336.132 kb on - strand, within CA264_10070at 2336.321 kb on + strandat 2336.321 kb on + strandat 2336.339 kb on + strandat 2336.349 kb on + strandat 2336.350 kb on - strandat 2336.353 kb on - strandat 2336.353 kb on - strandat 2336.353 kb on - strandat 2336.358 kb on + strandat 2336.358 kb on + strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.359 kb on - strandat 2336.362 kb on + strandat 2336.362 kb on + strandat 2336.380 kb on - strandat 2336.380 kb on - strandat 2336.389 kb on - strandat 2336.432 kb on + strandat 2336.432 kb on + strandat 2336.433 kb on - strandat 2336.445 kb on + strandat 2336.457 kb on + strandat 2336.471 kb on + strandat 2336.471 kb on + strandat 2336.471 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,333,890 + CA264_10055 0.75 +0.3
2,333,918 - CA264_10055 0.79 -0.3
2,333,918 - CA264_10055 0.79 +1.9
2,333,956 - CA264_10055 0.85 +0.4
2,333,960 + CA264_10055 0.86 -1.1
2,333,961 - CA264_10055 0.86 -0.5
2,333,995 + -0.1
2,334,050 + +0.6
2,334,168 + -0.3
2,334,168 + +2.3
2,334,327 + CA264_10060 0.29 -1.9
2,334,351 - CA264_10060 0.32 +0.1
2,334,355 - CA264_10060 0.32 -0.3
2,334,531 - CA264_10060 0.53 -0.8
2,334,569 + CA264_10060 0.58 -0.7
2,334,569 + CA264_10060 0.58 +0.6
2,334,570 - CA264_10060 0.58 +0.2
2,334,670 + CA264_10060 0.70 -0.1
2,334,860 + +0.5
2,334,860 + -1.5
2,334,861 - -0.2
2,334,869 - -0.5
2,334,883 - +1.0
2,334,883 - -1.4
2,334,889 + +0.3
2,334,890 - -0.3
2,334,975 - CA264_10065 0.13 +0.1
2,334,976 + CA264_10065 0.14 -0.7
2,334,976 + CA264_10065 0.14 +1.3
2,334,977 - CA264_10065 0.14 +1.0
2,334,977 - CA264_10065 0.14 +1.6
2,335,012 + CA264_10065 0.19 +1.1
2,335,123 + CA264_10065 0.37 -0.3
2,335,124 - CA264_10065 0.37 +0.2
2,335,124 - CA264_10065 0.37 +0.2
2,335,268 + CA264_10065 0.60 -0.0
2,335,269 - CA264_10065 0.60 -1.5
2,335,269 - CA264_10065 0.60 -0.1
2,335,269 - CA264_10065 0.60 -0.6
2,335,487 + -0.9
2,335,488 - +0.5
2,335,531 + -0.5
2,335,600 - +0.4
2,335,628 + -0.1
2,335,628 + +0.8
2,335,629 - +0.2
2,335,641 + +0.1
2,335,669 - -0.5
2,335,721 + -0.0
2,335,721 + +0.9
2,335,731 - -0.3
2,335,731 - -0.4
2,335,733 - +0.2
2,335,739 + -0.2
2,335,739 + -2.2
2,335,739 + -0.5
2,335,740 - -0.0
2,335,740 - +0.1
2,335,749 + +0.9
2,335,749 + +0.2
2,335,749 + -0.2
2,335,750 - +0.5
2,335,853 + +0.3
2,335,854 - +1.6
2,335,854 - -0.2
2,335,860 - +1.1
2,335,860 - -0.7
2,335,880 - -0.5
2,335,880 - -1.4
2,335,880 - -0.2
2,335,927 - +1.0
2,335,927 - -1.0
2,335,936 + -0.3
2,335,937 - +0.1
2,336,057 + CA264_10070 0.34 +0.1
2,336,093 + CA264_10070 0.44 +0.9
2,336,094 - CA264_10070 0.44 +0.1
2,336,094 - CA264_10070 0.44 +0.7
2,336,094 - CA264_10070 0.44 +0.1
2,336,094 - CA264_10070 0.44 -1.6
2,336,122 + CA264_10070 0.51 +0.7
2,336,123 - CA264_10070 0.52 +0.1
2,336,132 - CA264_10070 0.54 -1.9
2,336,132 - CA264_10070 0.54 +0.3
2,336,321 + +0.3
2,336,321 + +0.7
2,336,339 + +0.2
2,336,349 + +0.5
2,336,350 - -0.4
2,336,353 - -0.1
2,336,353 - +0.2
2,336,353 - -0.7
2,336,358 + +0.2
2,336,358 + +0.2
2,336,359 - -0.0
2,336,359 - +1.0
2,336,359 - -1.2
2,336,359 - -1.1
2,336,359 - +0.1
2,336,362 + -0.3
2,336,362 + +0.4
2,336,380 - -0.2
2,336,380 - -1.1
2,336,389 - +0.6
2,336,432 + -0.0
2,336,432 + -0.3
2,336,433 - -0.3
2,336,445 + -0.1
2,336,457 + -0.3
2,336,471 + -0.3
2,336,471 + +0.4
2,336,471 + +1.5

Or see this region's nucleotide sequence