Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08785

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08775 and CA264_08780 are separated by 70 nucleotidesCA264_08780 and CA264_08785 are separated by 113 nucleotidesCA264_08785 and CA264_08790 are separated by 7 nucleotidesCA264_08790 and CA264_08795 overlap by 4 nucleotides CA264_08775: CA264_08775 - ZIP family metal transporter, at 2,049,662 to 2,050,486 _08775 CA264_08780: CA264_08780 - hypothetical protein, at 2,050,557 to 2,051,318 _08780 CA264_08785: CA264_08785 - hypothetical protein, at 2,051,432 to 2,052,622 _08785 CA264_08790: CA264_08790 - LamB/YcsF family protein, at 2,052,630 to 2,053,391 _08790 CA264_08795: CA264_08795 - KipI antagonist, at 2,053,388 to 2,054,401 _08795 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -1 0 1 2 3at 2050.443 kb on + strandat 2050.486 kb on + strandat 2050.486 kb on + strandat 2050.487 kb on - strandat 2050.487 kb on - strandat 2050.588 kb on + strandat 2050.588 kb on + strandat 2050.661 kb on + strand, within CA264_08780at 2050.666 kb on + strand, within CA264_08780at 2050.709 kb on + strand, within CA264_08780at 2050.709 kb on + strand, within CA264_08780at 2050.709 kb on + strand, within CA264_08780at 2050.709 kb on + strand, within CA264_08780at 2050.710 kb on - strand, within CA264_08780at 2050.710 kb on - strand, within CA264_08780at 2050.710 kb on - strand, within CA264_08780at 2050.710 kb on - strand, within CA264_08780at 2050.713 kb on + strand, within CA264_08780at 2050.779 kb on - strand, within CA264_08780at 2050.844 kb on + strand, within CA264_08780at 2050.887 kb on + strand, within CA264_08780at 2050.932 kb on + strand, within CA264_08780at 2050.945 kb on + strand, within CA264_08780at 2051.072 kb on + strand, within CA264_08780at 2051.073 kb on - strand, within CA264_08780at 2051.083 kb on + strand, within CA264_08780at 2051.178 kb on + strand, within CA264_08780at 2051.178 kb on + strand, within CA264_08780at 2051.187 kb on + strand, within CA264_08780at 2051.187 kb on + strand, within CA264_08780at 2051.187 kb on + strand, within CA264_08780at 2051.187 kb on + strand, within CA264_08780at 2051.188 kb on - strand, within CA264_08780at 2051.188 kb on - strand, within CA264_08780at 2051.188 kb on - strand, within CA264_08780at 2051.190 kb on - strand, within CA264_08780at 2051.228 kb on + strand, within CA264_08780at 2051.229 kb on - strand, within CA264_08780at 2051.229 kb on - strand, within CA264_08780at 2051.313 kb on + strandat 2051.314 kb on - strandat 2051.318 kb on + strandat 2051.318 kb on + strandat 2051.425 kb on + strandat 2051.484 kb on + strandat 2051.484 kb on + strandat 2051.485 kb on - strandat 2051.542 kb on - strandat 2051.566 kb on - strand, within CA264_08785at 2051.574 kb on + strand, within CA264_08785at 2051.631 kb on - strand, within CA264_08785at 2051.631 kb on - strand, within CA264_08785at 2051.631 kb on - strand, within CA264_08785at 2051.632 kb on + strand, within CA264_08785at 2051.633 kb on - strand, within CA264_08785at 2051.633 kb on - strand, within CA264_08785at 2051.669 kb on - strand, within CA264_08785at 2051.687 kb on - strand, within CA264_08785at 2051.699 kb on - strand, within CA264_08785at 2051.821 kb on - strand, within CA264_08785at 2051.933 kb on - strand, within CA264_08785at 2052.129 kb on - strand, within CA264_08785at 2052.146 kb on - strand, within CA264_08785at 2052.273 kb on - strand, within CA264_08785at 2052.301 kb on + strand, within CA264_08785at 2052.332 kb on + strand, within CA264_08785at 2052.333 kb on - strand, within CA264_08785at 2052.333 kb on - strand, within CA264_08785at 2052.334 kb on + strand, within CA264_08785at 2052.337 kb on + strand, within CA264_08785at 2052.409 kb on + strand, within CA264_08785at 2052.450 kb on - strand, within CA264_08785at 2052.456 kb on - strand, within CA264_08785at 2052.481 kb on + strand, within CA264_08785at 2052.739 kb on - strand, within CA264_08790at 2052.823 kb on - strand, within CA264_08790at 2052.878 kb on + strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.958 kb on + strand, within CA264_08790at 2052.963 kb on + strand, within CA264_08790at 2052.963 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.978 kb on + strand, within CA264_08790at 2052.979 kb on - strand, within CA264_08790at 2052.979 kb on - strand, within CA264_08790at 2053.040 kb on - strand, within CA264_08790at 2053.118 kb on - strand, within CA264_08790at 2053.132 kb on + strand, within CA264_08790at 2053.132 kb on + strand, within CA264_08790at 2053.133 kb on - strand, within CA264_08790at 2053.273 kb on + strand, within CA264_08790at 2053.274 kb on - strand, within CA264_08790at 2053.298 kb on + strand, within CA264_08790at 2053.298 kb on + strand, within CA264_08790at 2053.401 kb on - strandat 2053.401 kb on - strandat 2053.453 kb on - strandat 2053.457 kb on + strandat 2053.458 kb on - strandat 2053.458 kb on - strandat 2053.458 kb on - strandat 2053.595 kb on - strand, within CA264_08795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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2,050,443 + -0.6
2,050,486 + +1.5
2,050,486 + +0.6
2,050,487 - +0.4
2,050,487 - -0.1
2,050,588 + -0.0
2,050,588 + -0.1
2,050,661 + CA264_08780 0.14 +0.7
2,050,666 + CA264_08780 0.14 +0.3
2,050,709 + CA264_08780 0.20 +0.6
2,050,709 + CA264_08780 0.20 +0.9
2,050,709 + CA264_08780 0.20 +1.8
2,050,709 + CA264_08780 0.20 +0.6
2,050,710 - CA264_08780 0.20 +0.3
2,050,710 - CA264_08780 0.20 +1.2
2,050,710 - CA264_08780 0.20 +1.2
2,050,710 - CA264_08780 0.20 +0.5
2,050,713 + CA264_08780 0.20 -0.5
2,050,779 - CA264_08780 0.29 +0.3
2,050,844 + CA264_08780 0.38 +3.0
2,050,887 + CA264_08780 0.43 +1.0
2,050,932 + CA264_08780 0.49 +1.4
2,050,945 + CA264_08780 0.51 +0.0
2,051,072 + CA264_08780 0.68 +0.5
2,051,073 - CA264_08780 0.68 -0.0
2,051,083 + CA264_08780 0.69 +2.3
2,051,178 + CA264_08780 0.81 +1.1
2,051,178 + CA264_08780 0.81 +0.7
2,051,187 + CA264_08780 0.83 +0.3
2,051,187 + CA264_08780 0.83 -1.0
2,051,187 + CA264_08780 0.83 -0.1
2,051,187 + CA264_08780 0.83 -0.0
2,051,188 - CA264_08780 0.83 +0.7
2,051,188 - CA264_08780 0.83 +0.5
2,051,188 - CA264_08780 0.83 +0.5
2,051,190 - CA264_08780 0.83 +0.5
2,051,228 + CA264_08780 0.88 -1.3
2,051,229 - CA264_08780 0.88 +0.1
2,051,229 - CA264_08780 0.88 +0.8
2,051,313 + +0.2
2,051,314 - -0.0
2,051,318 + +0.3
2,051,318 + +0.6
2,051,425 + -1.3
2,051,484 + -0.4
2,051,484 + +0.6
2,051,485 - +1.1
2,051,542 - +0.1
2,051,566 - CA264_08785 0.11 +0.5
2,051,574 + CA264_08785 0.12 -0.2
2,051,631 - CA264_08785 0.17 +1.1
2,051,631 - CA264_08785 0.17 +1.2
2,051,631 - CA264_08785 0.17 -0.2
2,051,632 + CA264_08785 0.17 +1.1
2,051,633 - CA264_08785 0.17 +0.1
2,051,633 - CA264_08785 0.17 +0.5
2,051,669 - CA264_08785 0.20 +1.0
2,051,687 - CA264_08785 0.21 +0.4
2,051,699 - CA264_08785 0.22 +0.3
2,051,821 - CA264_08785 0.33 +0.0
2,051,933 - CA264_08785 0.42 -0.4
2,052,129 - CA264_08785 0.59 -0.4
2,052,146 - CA264_08785 0.60 -0.2
2,052,273 - CA264_08785 0.71 -0.0
2,052,301 + CA264_08785 0.73 +0.2
2,052,332 + CA264_08785 0.76 +0.1
2,052,333 - CA264_08785 0.76 +0.3
2,052,333 - CA264_08785 0.76 -0.4
2,052,334 + CA264_08785 0.76 +0.1
2,052,337 + CA264_08785 0.76 +0.2
2,052,409 + CA264_08785 0.82 +0.2
2,052,450 - CA264_08785 0.85 +0.0
2,052,456 - CA264_08785 0.86 -0.9
2,052,481 + CA264_08785 0.88 +0.7
2,052,739 - CA264_08790 0.14 +1.3
2,052,823 - CA264_08790 0.25 +2.5
2,052,878 + CA264_08790 0.33 -1.5
2,052,879 - CA264_08790 0.33 -0.2
2,052,879 - CA264_08790 0.33 +0.3
2,052,879 - CA264_08790 0.33 +0.4
2,052,958 + CA264_08790 0.43 -0.3
2,052,963 + CA264_08790 0.44 -1.4
2,052,963 + CA264_08790 0.44 -0.5
2,052,965 + CA264_08790 0.44 +0.7
2,052,965 + CA264_08790 0.44 -0.3
2,052,965 + CA264_08790 0.44 -0.5
2,052,978 + CA264_08790 0.46 -0.3
2,052,979 - CA264_08790 0.46 +0.7
2,052,979 - CA264_08790 0.46 +0.3
2,053,040 - CA264_08790 0.54 -0.0
2,053,118 - CA264_08790 0.64 -1.2
2,053,132 + CA264_08790 0.66 -0.4
2,053,132 + CA264_08790 0.66 -0.5
2,053,133 - CA264_08790 0.66 +0.1
2,053,273 + CA264_08790 0.84 -1.2
2,053,274 - CA264_08790 0.85 -0.4
2,053,298 + CA264_08790 0.88 -1.0
2,053,298 + CA264_08790 0.88 -0.6
2,053,401 - +0.4
2,053,401 - +0.6
2,053,453 - -0.8
2,053,457 + +0.2
2,053,458 - -0.8
2,053,458 - +0.1
2,053,458 - -0.4
2,053,595 - CA264_08795 0.20 -0.0

Or see this region's nucleotide sequence