Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05210

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05200 and CA264_05205 are separated by 119 nucleotidesCA264_05205 and CA264_05210 are separated by 58 nucleotidesCA264_05210 and CA264_05215 are separated by 58 nucleotidesCA264_05215 and CA264_05220 are separated by 223 nucleotides CA264_05200: CA264_05200 - GDP-mannose 4,6-dehydratase, at 1,207,408 to 1,208,520 _05200 CA264_05205: CA264_05205 - tRNA-Asp, at 1,208,640 to 1,208,713 _05205 CA264_05210: CA264_05210 - tRNA-Asp, at 1,208,772 to 1,208,845 _05210 CA264_05215: CA264_05215 - tRNA-Asp, at 1,208,904 to 1,208,977 _05215 CA264_05220: CA264_05220 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,209,201 to 1,210,151 _05220 Position (kb) 1208 1209Strain fitness (log2 ratio) -1 0 1at 1207.789 kb on + strand, within CA264_05200at 1207.892 kb on - strand, within CA264_05200at 1207.905 kb on + strand, within CA264_05200at 1207.912 kb on - strand, within CA264_05200at 1207.912 kb on - strand, within CA264_05200at 1207.912 kb on - strand, within CA264_05200at 1207.936 kb on + strand, within CA264_05200at 1207.936 kb on + strand, within CA264_05200at 1207.936 kb on + strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.951 kb on - strand, within CA264_05200at 1207.951 kb on - strand, within CA264_05200at 1207.956 kb on - strand, within CA264_05200at 1207.960 kb on - strand, within CA264_05200at 1208.058 kb on - strand, within CA264_05200at 1208.058 kb on - strand, within CA264_05200at 1208.101 kb on + strand, within CA264_05200at 1208.102 kb on - strand, within CA264_05200at 1208.102 kb on - strand, within CA264_05200at 1208.102 kb on - strand, within CA264_05200at 1208.105 kb on + strand, within CA264_05200at 1208.105 kb on + strand, within CA264_05200at 1208.105 kb on + strand, within CA264_05200at 1208.106 kb on - strand, within CA264_05200at 1208.106 kb on - strand, within CA264_05200at 1208.150 kb on - strand, within CA264_05200at 1208.214 kb on - strand, within CA264_05200at 1208.260 kb on + strand, within CA264_05200at 1208.260 kb on + strand, within CA264_05200at 1208.261 kb on - strand, within CA264_05200at 1208.322 kb on - strand, within CA264_05200at 1208.388 kb on + strand, within CA264_05200at 1208.389 kb on - strand, within CA264_05200at 1208.410 kb on + strandat 1208.477 kb on - strandat 1208.529 kb on + strandat 1208.534 kb on + strandat 1208.534 kb on + strandat 1208.535 kb on - strandat 1208.535 kb on - strandat 1208.535 kb on - strandat 1208.536 kb on + strandat 1208.536 kb on + strandat 1208.536 kb on + strandat 1208.537 kb on - strandat 1208.537 kb on - strandat 1208.540 kb on - strandat 1208.583 kb on - strandat 1208.583 kb on - strandat 1209.062 kb on + strandat 1209.071 kb on - strandat 1209.086 kb on - strandat 1209.089 kb on - strandat 1209.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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1,207,789 + CA264_05200 0.34 +0.9
1,207,892 - CA264_05200 0.43 +0.5
1,207,905 + CA264_05200 0.45 -0.5
1,207,912 - CA264_05200 0.45 -0.5
1,207,912 - CA264_05200 0.45 +0.9
1,207,912 - CA264_05200 0.45 +0.1
1,207,936 + CA264_05200 0.47 -0.4
1,207,936 + CA264_05200 0.47 -0.0
1,207,936 + CA264_05200 0.47 -0.3
1,207,937 - CA264_05200 0.48 -0.1
1,207,937 - CA264_05200 0.48 -0.0
1,207,937 - CA264_05200 0.48 -0.3
1,207,937 - CA264_05200 0.48 +0.1
1,207,937 - CA264_05200 0.48 -0.4
1,207,951 - CA264_05200 0.49 -0.2
1,207,951 - CA264_05200 0.49 -0.3
1,207,956 - CA264_05200 0.49 -0.3
1,207,960 - CA264_05200 0.50 +0.2
1,208,058 - CA264_05200 0.58 -0.3
1,208,058 - CA264_05200 0.58 +0.2
1,208,101 + CA264_05200 0.62 +0.3
1,208,102 - CA264_05200 0.62 -0.6
1,208,102 - CA264_05200 0.62 +0.0
1,208,102 - CA264_05200 0.62 -0.4
1,208,105 + CA264_05200 0.63 -0.1
1,208,105 + CA264_05200 0.63 -0.1
1,208,105 + CA264_05200 0.63 +0.1
1,208,106 - CA264_05200 0.63 +0.4
1,208,106 - CA264_05200 0.63 -0.4
1,208,150 - CA264_05200 0.67 -0.2
1,208,214 - CA264_05200 0.72 -0.3
1,208,260 + CA264_05200 0.77 -0.1
1,208,260 + CA264_05200 0.77 +0.2
1,208,261 - CA264_05200 0.77 +0.5
1,208,322 - CA264_05200 0.82 -1.0
1,208,388 + CA264_05200 0.88 +0.4
1,208,389 - CA264_05200 0.88 -0.0
1,208,410 + -0.3
1,208,477 - +0.4
1,208,529 + -1.0
1,208,534 + +0.4
1,208,534 + +0.2
1,208,535 - +0.0
1,208,535 - +0.6
1,208,535 - -0.2
1,208,536 + -0.0
1,208,536 + -1.7
1,208,536 + -1.0
1,208,537 - +0.5
1,208,537 - -0.3
1,208,540 - -0.9
1,208,583 - +0.0
1,208,583 - +0.1
1,209,062 + +0.0
1,209,071 - -1.3
1,209,086 - -1.0
1,209,089 - +0.1
1,209,129 + -0.0

Or see this region's nucleotide sequence