Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04935

Experiment: m.b. Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04930 and CA264_04935 are separated by 232 nucleotidesCA264_04935 and CA264_04940 are separated by 33 nucleotides CA264_04930: CA264_04930 - DNA polymerase III subunit delta, at 1,143,955 to 1,145,001 _04930 CA264_04935: CA264_04935 - hypothetical protein, at 1,145,234 to 1,148,374 _04935 CA264_04940: CA264_04940 - hypothetical protein, at 1,148,408 to 1,150,102 _04940 Position (kb) 1145 1146 1147 1148 1149Strain fitness (log2 ratio) -2 -1 0 1at 1145.011 kb on + strandat 1145.015 kb on + strandat 1145.015 kb on + strandat 1145.016 kb on - strandat 1145.053 kb on + strandat 1145.054 kb on - strandat 1145.054 kb on - strandat 1145.054 kb on - strandat 1145.054 kb on - strandat 1145.055 kb on + strandat 1145.069 kb on + strandat 1145.069 kb on + strandat 1145.089 kb on - strandat 1145.129 kb on + strandat 1145.130 kb on - strandat 1145.178 kb on + strandat 1145.178 kb on + strandat 1145.179 kb on - strandat 1145.191 kb on - strandat 1145.229 kb on + strandat 1145.230 kb on - strandat 1145.234 kb on - strandat 1145.241 kb on + strandat 1145.923 kb on + strand, within CA264_04935at 1146.065 kb on + strand, within CA264_04935at 1147.692 kb on - strand, within CA264_04935at 1147.710 kb on - strand, within CA264_04935at 1147.712 kb on + strand, within CA264_04935at 1147.712 kb on + strand, within CA264_04935at 1147.712 kb on + strand, within CA264_04935at 1148.024 kb on + strand, within CA264_04935at 1148.026 kb on + strand, within CA264_04935at 1148.161 kb on + strandat 1148.172 kb on + strandat 1148.301 kb on + strandat 1148.373 kb on - strandat 1148.404 kb on + strandat 1148.417 kb on - strandat 1148.671 kb on - strand, within CA264_04940at 1148.814 kb on - strand, within CA264_04940at 1148.860 kb on + strand, within CA264_04940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
remove
1,145,011 + -0.2
1,145,015 + -0.7
1,145,015 + +0.3
1,145,016 - +0.2
1,145,053 + -0.7
1,145,054 - -0.0
1,145,054 - +0.4
1,145,054 - -0.8
1,145,054 - -0.8
1,145,055 + +0.4
1,145,069 + -0.5
1,145,069 + +0.4
1,145,089 - +1.0
1,145,129 + +0.8
1,145,130 - -0.2
1,145,178 + -0.3
1,145,178 + +0.6
1,145,179 - -1.0
1,145,191 - -0.6
1,145,229 + +0.4
1,145,230 - +0.6
1,145,234 - -0.7
1,145,241 + -1.8
1,145,923 + CA264_04935 0.22 -1.6
1,146,065 + CA264_04935 0.26 -0.3
1,147,692 - CA264_04935 0.78 -1.3
1,147,710 - CA264_04935 0.79 -1.9
1,147,712 + CA264_04935 0.79 +0.3
1,147,712 + CA264_04935 0.79 -1.4
1,147,712 + CA264_04935 0.79 -0.3
1,148,024 + CA264_04935 0.89 -1.1
1,148,026 + CA264_04935 0.89 +1.3
1,148,161 + -1.4
1,148,172 + +0.7
1,148,301 + -1.1
1,148,373 - -0.0
1,148,404 + -0.2
1,148,417 - -0.5
1,148,671 - CA264_04940 0.16 -1.7
1,148,814 - CA264_04940 0.24 -1.0
1,148,860 + CA264_04940 0.27 -0.0

Or see this region's nucleotide sequence