Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04170

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04165 and CA264_04170 are separated by 609 nucleotidesCA264_04170 and CA264_04175 are separated by 87 nucleotidesCA264_04175 and CA264_04180 overlap by 8 nucleotides CA264_04165: CA264_04165 - isoaspartyl peptidase/L-asparaginase, at 961,165 to 962,079 _04165 CA264_04170: CA264_04170 - cation transporter, at 962,689 to 963,621 _04170 CA264_04175: CA264_04175 - hypothetical protein, at 963,709 to 964,260 _04175 CA264_04180: CA264_04180 - hypothetical protein, at 964,253 to 965,755 _04180 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 961.716 kb on + strand, within CA264_04165at 961.775 kb on + strand, within CA264_04165at 961.776 kb on - strand, within CA264_04165at 961.783 kb on - strand, within CA264_04165at 962.016 kb on + strandat 962.097 kb on - strandat 962.215 kb on - strandat 962.215 kb on - strandat 962.216 kb on + strandat 962.216 kb on + strandat 962.217 kb on - strandat 962.217 kb on - strandat 962.217 kb on - strandat 962.217 kb on - strandat 962.226 kb on + strandat 962.226 kb on + strandat 962.280 kb on - strandat 962.309 kb on + strandat 962.309 kb on + strandat 962.326 kb on - strandat 962.357 kb on + strandat 962.419 kb on - strandat 962.490 kb on + strandat 962.491 kb on - strandat 962.548 kb on - strandat 962.638 kb on - strandat 962.638 kb on - strandat 962.672 kb on + strandat 962.673 kb on - strandat 962.674 kb on + strandat 962.675 kb on - strandat 962.675 kb on - strandat 962.677 kb on + strandat 962.678 kb on - strandat 962.678 kb on - strandat 962.679 kb on + strandat 962.696 kb on + strandat 962.696 kb on + strandat 962.764 kb on - strandat 962.852 kb on + strand, within CA264_04170at 962.853 kb on - strand, within CA264_04170at 962.917 kb on + strand, within CA264_04170at 962.947 kb on - strand, within CA264_04170at 962.977 kb on + strand, within CA264_04170at 962.988 kb on + strand, within CA264_04170at 962.989 kb on - strand, within CA264_04170at 963.024 kb on + strand, within CA264_04170at 963.025 kb on - strand, within CA264_04170at 963.034 kb on + strand, within CA264_04170at 963.035 kb on - strand, within CA264_04170at 963.088 kb on + strand, within CA264_04170at 963.088 kb on + strand, within CA264_04170at 963.089 kb on - strand, within CA264_04170at 963.166 kb on - strand, within CA264_04170at 963.328 kb on - strand, within CA264_04170at 963.376 kb on - strand, within CA264_04170at 963.456 kb on - strand, within CA264_04170at 963.575 kb on + strandat 963.627 kb on - strandat 963.633 kb on - strandat 963.666 kb on - strandat 963.666 kb on - strandat 963.668 kb on - strandat 963.668 kb on - strandat 963.669 kb on + strandat 963.669 kb on + strandat 963.669 kb on + strandat 963.669 kb on + strandat 963.669 kb on + strandat 963.669 kb on + strandat 963.669 kb on + strandat 963.670 kb on - strandat 963.670 kb on - strandat 963.670 kb on - strandat 963.670 kb on - strandat 963.670 kb on - strandat 963.670 kb on - strandat 963.730 kb on + strandat 963.738 kb on + strandat 963.738 kb on + strandat 963.810 kb on + strand, within CA264_04175at 963.811 kb on - strand, within CA264_04175at 963.889 kb on - strand, within CA264_04175at 963.896 kb on + strand, within CA264_04175at 963.897 kb on - strand, within CA264_04175at 963.946 kb on + strand, within CA264_04175at 963.948 kb on + strand, within CA264_04175at 963.949 kb on - strand, within CA264_04175at 963.983 kb on - strand, within CA264_04175at 964.003 kb on + strand, within CA264_04175at 964.091 kb on + strand, within CA264_04175at 964.099 kb on + strand, within CA264_04175at 964.099 kb on + strand, within CA264_04175at 964.099 kb on + strand, within CA264_04175at 964.100 kb on - strand, within CA264_04175at 964.100 kb on - strand, within CA264_04175at 964.100 kb on - strand, within CA264_04175at 964.114 kb on + strand, within CA264_04175at 964.115 kb on - strand, within CA264_04175at 964.231 kb on + strandat 964.231 kb on + strandat 964.232 kb on - strandat 964.233 kb on + strandat 964.233 kb on + strandat 964.233 kb on + strandat 964.233 kb on + strandat 964.234 kb on - strandat 964.234 kb on - strandat 964.234 kb on - strandat 964.331 kb on + strandat 964.332 kb on - strandat 964.360 kb on - strandat 964.360 kb on - strandat 964.488 kb on - strand, within CA264_04180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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961,716 + CA264_04165 0.60 -0.2
961,775 + CA264_04165 0.67 +0.1
961,776 - CA264_04165 0.67 +1.2
961,783 - CA264_04165 0.68 +0.9
962,016 + +1.2
962,097 - -0.4
962,215 - -1.0
962,215 - -0.1
962,216 + -0.2
962,216 + +0.7
962,217 - -0.5
962,217 - +0.0
962,217 - -0.2
962,217 - +0.1
962,226 + -1.5
962,226 + -0.0
962,280 - -0.1
962,309 + -0.4
962,309 + +0.5
962,326 - -0.1
962,357 + +0.1
962,419 - -0.3
962,490 + -0.3
962,491 - -0.1
962,548 - +0.5
962,638 - -0.7
962,638 - +0.5
962,672 + -0.2
962,673 - -0.1
962,674 + +0.9
962,675 - -0.0
962,675 - +1.3
962,677 + -0.0
962,678 - -0.1
962,678 - -0.3
962,679 + -2.0
962,696 + -0.6
962,696 + +0.4
962,764 - +0.3
962,852 + CA264_04170 0.17 +1.0
962,853 - CA264_04170 0.18 -0.1
962,917 + CA264_04170 0.24 +1.3
962,947 - CA264_04170 0.28 -0.4
962,977 + CA264_04170 0.31 +0.2
962,988 + CA264_04170 0.32 +0.7
962,989 - CA264_04170 0.32 +0.2
963,024 + CA264_04170 0.36 -0.3
963,025 - CA264_04170 0.36 -0.2
963,034 + CA264_04170 0.37 +1.1
963,035 - CA264_04170 0.37 +0.8
963,088 + CA264_04170 0.43 +0.0
963,088 + CA264_04170 0.43 -0.3
963,089 - CA264_04170 0.43 +0.5
963,166 - CA264_04170 0.51 +0.8
963,328 - CA264_04170 0.68 -1.1
963,376 - CA264_04170 0.74 +0.7
963,456 - CA264_04170 0.82 +0.6
963,575 + -0.4
963,627 - -0.4
963,633 - +1.2
963,666 - -1.3
963,666 - +0.4
963,668 - -0.7
963,668 - -0.4
963,669 + +0.2
963,669 + +0.5
963,669 + +0.7
963,669 + +0.4
963,669 + +0.4
963,669 + -0.1
963,669 + -0.3
963,670 - -0.7
963,670 - -0.0
963,670 - -0.9
963,670 - +0.7
963,670 - -0.7
963,670 - -0.2
963,730 + +0.1
963,738 + -0.1
963,738 + +0.0
963,810 + CA264_04175 0.18 -0.2
963,811 - CA264_04175 0.18 -1.7
963,889 - CA264_04175 0.33 -0.5
963,896 + CA264_04175 0.34 -1.3
963,897 - CA264_04175 0.34 -0.1
963,946 + CA264_04175 0.43 +0.2
963,948 + CA264_04175 0.43 +0.3
963,949 - CA264_04175 0.43 -1.3
963,983 - CA264_04175 0.50 -0.2
964,003 + CA264_04175 0.53 +0.1
964,091 + CA264_04175 0.69 +1.2
964,099 + CA264_04175 0.71 -0.5
964,099 + CA264_04175 0.71 +0.0
964,099 + CA264_04175 0.71 +0.2
964,100 - CA264_04175 0.71 -0.4
964,100 - CA264_04175 0.71 +0.1
964,100 - CA264_04175 0.71 -0.3
964,114 + CA264_04175 0.73 -0.2
964,115 - CA264_04175 0.74 +0.9
964,231 + -0.9
964,231 + +0.2
964,232 - +0.7
964,233 + -0.2
964,233 + +2.6
964,233 + +0.2
964,233 + -0.5
964,234 - -0.3
964,234 - -0.0
964,234 - +0.1
964,331 + +1.4
964,332 - +0.2
964,360 - -0.6
964,360 - -0.1
964,488 - CA264_04180 0.16 -0.2

Or see this region's nucleotide sequence