Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03950

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03945 and CA264_03950 are separated by 368 nucleotidesCA264_03950 and CA264_03955 are separated by 3 nucleotides CA264_03945: CA264_03945 - hypothetical protein, at 915,313 to 916,218 _03945 CA264_03950: CA264_03950 - 4-carboxymuconolactone decarboxylase, at 916,587 to 916,922 _03950 CA264_03955: CA264_03955 - radical SAM/Cys-rich domain protein, at 916,926 to 917,993 _03955 Position (kb) 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 915.595 kb on + strand, within CA264_03945at 915.596 kb on - strand, within CA264_03945at 915.598 kb on + strand, within CA264_03945at 915.599 kb on - strand, within CA264_03945at 915.599 kb on - strand, within CA264_03945at 915.601 kb on - strand, within CA264_03945at 915.624 kb on + strand, within CA264_03945at 915.624 kb on + strand, within CA264_03945at 915.629 kb on - strand, within CA264_03945at 915.651 kb on + strand, within CA264_03945at 915.651 kb on + strand, within CA264_03945at 915.741 kb on + strand, within CA264_03945at 915.741 kb on + strand, within CA264_03945at 915.742 kb on - strand, within CA264_03945at 915.768 kb on + strand, within CA264_03945at 915.783 kb on + strand, within CA264_03945at 915.783 kb on + strand, within CA264_03945at 915.783 kb on + strand, within CA264_03945at 915.784 kb on - strand, within CA264_03945at 915.819 kb on + strand, within CA264_03945at 915.901 kb on + strand, within CA264_03945at 915.901 kb on + strand, within CA264_03945at 915.901 kb on + strand, within CA264_03945at 915.901 kb on + strand, within CA264_03945at 915.935 kb on + strand, within CA264_03945at 916.067 kb on - strand, within CA264_03945at 916.083 kb on + strand, within CA264_03945at 916.116 kb on - strand, within CA264_03945at 916.116 kb on - strand, within CA264_03945at 916.120 kb on + strand, within CA264_03945at 916.121 kb on - strand, within CA264_03945at 916.179 kb on + strandat 916.179 kb on + strandat 916.179 kb on + strandat 916.180 kb on - strandat 916.264 kb on + strandat 916.265 kb on - strandat 916.265 kb on - strandat 916.267 kb on + strandat 916.267 kb on + strandat 916.270 kb on + strandat 916.270 kb on + strandat 916.271 kb on - strandat 916.271 kb on - strandat 916.271 kb on - strandat 916.273 kb on + strandat 916.273 kb on + strandat 916.274 kb on - strandat 916.274 kb on - strandat 916.277 kb on - strandat 916.277 kb on - strandat 916.323 kb on - strandat 916.330 kb on + strandat 916.330 kb on + strandat 916.331 kb on - strandat 916.363 kb on + strandat 916.364 kb on - strandat 916.375 kb on + strandat 916.375 kb on + strandat 916.431 kb on - strandat 916.431 kb on - strandat 916.462 kb on + strandat 916.463 kb on - strandat 916.552 kb on + strandat 916.564 kb on - strandat 916.585 kb on - strandat 916.599 kb on + strandat 916.709 kb on + strand, within CA264_03950at 916.710 kb on - strand, within CA264_03950at 916.757 kb on - strand, within CA264_03950at 916.920 kb on + strandat 916.923 kb on + strandat 916.924 kb on - strandat 916.924 kb on - strandat 916.949 kb on + strandat 916.950 kb on - strandat 916.950 kb on - strandat 917.009 kb on + strandat 917.009 kb on + strandat 917.009 kb on + strandat 917.066 kb on - strand, within CA264_03955at 917.093 kb on + strand, within CA264_03955at 917.093 kb on + strand, within CA264_03955at 917.234 kb on - strand, within CA264_03955at 917.234 kb on - strand, within CA264_03955at 917.242 kb on + strand, within CA264_03955at 917.243 kb on - strand, within CA264_03955at 917.350 kb on + strand, within CA264_03955at 917.350 kb on + strand, within CA264_03955at 917.350 kb on + strand, within CA264_03955at 917.351 kb on - strand, within CA264_03955at 917.556 kb on + strand, within CA264_03955at 917.557 kb on - strand, within CA264_03955at 917.624 kb on - strand, within CA264_03955at 917.698 kb on - strand, within CA264_03955at 917.718 kb on + strand, within CA264_03955at 917.718 kb on + strand, within CA264_03955at 917.719 kb on - strand, within CA264_03955at 917.728 kb on - strand, within CA264_03955at 917.820 kb on + strand, within CA264_03955at 917.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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915,595 + CA264_03945 0.31 -0.3
915,596 - CA264_03945 0.31 +0.6
915,598 + CA264_03945 0.31 +0.2
915,599 - CA264_03945 0.32 -0.5
915,599 - CA264_03945 0.32 +0.1
915,601 - CA264_03945 0.32 -0.6
915,624 + CA264_03945 0.34 -0.7
915,624 + CA264_03945 0.34 -0.1
915,629 - CA264_03945 0.35 -0.0
915,651 + CA264_03945 0.37 -0.7
915,651 + CA264_03945 0.37 -0.2
915,741 + CA264_03945 0.47 -0.6
915,741 + CA264_03945 0.47 +0.5
915,742 - CA264_03945 0.47 +0.6
915,768 + CA264_03945 0.50 +0.4
915,783 + CA264_03945 0.52 +0.3
915,783 + CA264_03945 0.52 +0.1
915,783 + CA264_03945 0.52 +0.9
915,784 - CA264_03945 0.52 +0.5
915,819 + CA264_03945 0.56 -0.0
915,901 + CA264_03945 0.65 -0.8
915,901 + CA264_03945 0.65 +0.5
915,901 + CA264_03945 0.65 +0.4
915,901 + CA264_03945 0.65 +0.0
915,935 + CA264_03945 0.69 -0.5
916,067 - CA264_03945 0.83 +0.2
916,083 + CA264_03945 0.85 +0.2
916,116 - CA264_03945 0.89 -0.3
916,116 - CA264_03945 0.89 +0.4
916,120 + CA264_03945 0.89 +0.4
916,121 - CA264_03945 0.89 -0.7
916,179 + -2.8
916,179 + -1.6
916,179 + +0.1
916,180 - +0.3
916,264 + +0.1
916,265 - +0.5
916,265 - -1.4
916,267 + -0.4
916,267 + -0.4
916,270 + +0.3
916,270 + -0.9
916,271 - +1.7
916,271 - -0.3
916,271 - -0.3
916,273 + -1.0
916,273 + +0.7
916,274 - +0.1
916,274 - -0.6
916,277 - -0.3
916,277 - -0.1
916,323 - +0.3
916,330 + -0.8
916,330 + +0.3
916,331 - -0.5
916,363 + +0.6
916,364 - -0.6
916,375 + +0.9
916,375 + -2.2
916,431 - +1.7
916,431 - +0.1
916,462 + +0.5
916,463 - +0.3
916,552 + +0.6
916,564 - +0.5
916,585 - +0.1
916,599 + +1.0
916,709 + CA264_03950 0.36 +0.1
916,710 - CA264_03950 0.37 +0.4
916,757 - CA264_03950 0.51 +1.8
916,920 + -0.4
916,923 + -0.4
916,924 - -0.4
916,924 - -0.5
916,949 + -1.0
916,950 - -0.1
916,950 - +0.8
917,009 + -1.3
917,009 + +0.6
917,009 + -0.6
917,066 - CA264_03955 0.13 +0.2
917,093 + CA264_03955 0.16 -1.8
917,093 + CA264_03955 0.16 +0.2
917,234 - CA264_03955 0.29 -0.6
917,234 - CA264_03955 0.29 -0.3
917,242 + CA264_03955 0.30 -1.7
917,243 - CA264_03955 0.30 -0.0
917,350 + CA264_03955 0.40 +0.2
917,350 + CA264_03955 0.40 -0.4
917,350 + CA264_03955 0.40 -0.6
917,351 - CA264_03955 0.40 +1.1
917,556 + CA264_03955 0.59 -0.0
917,557 - CA264_03955 0.59 -1.7
917,624 - CA264_03955 0.65 -0.4
917,698 - CA264_03955 0.72 +0.3
917,718 + CA264_03955 0.74 -0.4
917,718 + CA264_03955 0.74 -0.7
917,719 - CA264_03955 0.74 -0.1
917,728 - CA264_03955 0.75 -0.6
917,820 + CA264_03955 0.84 -1.1
917,905 + +0.4

Or see this region's nucleotide sequence