Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02470

Experiment: m.b. Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02460 and CA264_02465 overlap by 4 nucleotidesCA264_02465 and CA264_02470 are separated by 99 nucleotidesCA264_02470 and CA264_02475 overlap by 56 nucleotides CA264_02460: CA264_02460 - sugar dehydrogenase, at 572,880 to 573,689 _02460 CA264_02465: CA264_02465 - hypothetical protein, at 573,686 to 573,901 _02465 CA264_02470: CA264_02470 - alkaline phosphatase family protein, at 574,001 to 575,404 _02470 CA264_02475: CA264_02475 - xylose isomerase, at 575,349 to 576,635 _02475 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1at 573.086 kb on + strand, within CA264_02460at 573.407 kb on + strand, within CA264_02460at 573.450 kb on + strand, within CA264_02460at 573.451 kb on - strand, within CA264_02460at 573.565 kb on + strand, within CA264_02460at 573.682 kb on + strandat 573.783 kb on + strand, within CA264_02465at 573.784 kb on - strand, within CA264_02465at 573.784 kb on - strand, within CA264_02465at 573.876 kb on - strand, within CA264_02465at 573.881 kb on - strandat 573.896 kb on + strandat 573.923 kb on + strandat 573.924 kb on - strandat 573.939 kb on + strandat 573.939 kb on + strandat 573.966 kb on - strandat 573.995 kb on + strandat 573.995 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.037 kb on + strandat 574.053 kb on - strandat 574.057 kb on + strandat 574.057 kb on + strandat 574.058 kb on - strandat 574.058 kb on - strandat 574.060 kb on + strandat 574.060 kb on + strandat 574.061 kb on - strandat 574.061 kb on - strandat 574.106 kb on - strandat 574.106 kb on - strandat 574.108 kb on - strandat 574.139 kb on - strandat 574.193 kb on - strand, within CA264_02470at 574.195 kb on + strand, within CA264_02470at 574.313 kb on - strand, within CA264_02470at 574.322 kb on + strand, within CA264_02470at 574.372 kb on - strand, within CA264_02470at 574.375 kb on + strand, within CA264_02470at 574.437 kb on + strand, within CA264_02470at 574.533 kb on + strand, within CA264_02470at 574.533 kb on + strand, within CA264_02470at 574.534 kb on - strand, within CA264_02470at 574.681 kb on + strand, within CA264_02470at 574.757 kb on + strand, within CA264_02470at 574.815 kb on + strand, within CA264_02470at 574.857 kb on + strand, within CA264_02470at 574.907 kb on + strand, within CA264_02470at 575.077 kb on - strand, within CA264_02470at 575.108 kb on - strand, within CA264_02470at 575.181 kb on - strand, within CA264_02470at 575.253 kb on + strand, within CA264_02470at 575.298 kb on - strandat 575.345 kb on - strandat 575.375 kb on + strandat 575.376 kb on - strandat 575.405 kb on + strandat 575.420 kb on + strandat 575.420 kb on + strandat 575.420 kb on + strandat 575.421 kb on - strandat 575.421 kb on - strandat 575.504 kb on - strand, within CA264_02475at 575.529 kb on + strand, within CA264_02475at 575.530 kb on - strand, within CA264_02475at 575.597 kb on - strand, within CA264_02475at 575.832 kb on + strand, within CA264_02475at 575.921 kb on - strand, within CA264_02475at 576.096 kb on + strand, within CA264_02475at 576.097 kb on - strand, within CA264_02475at 576.173 kb on - strand, within CA264_02475at 576.302 kb on - strand, within CA264_02475at 576.351 kb on + strand, within CA264_02475at 576.352 kb on - strand, within CA264_02475at 576.403 kb on + strand, within CA264_02475at 576.403 kb on + strand, within CA264_02475

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 500 mM
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573,086 + CA264_02460 0.25 -0.8
573,407 + CA264_02460 0.65 -0.9
573,450 + CA264_02460 0.70 +0.1
573,451 - CA264_02460 0.70 +1.4
573,565 + CA264_02460 0.85 -0.3
573,682 + -0.1
573,783 + CA264_02465 0.45 -0.6
573,784 - CA264_02465 0.45 -0.0
573,784 - CA264_02465 0.45 +0.4
573,876 - CA264_02465 0.88 +0.2
573,881 - -0.1
573,896 + +0.1
573,923 + -1.0
573,924 - +0.3
573,939 + -0.4
573,939 + +1.5
573,966 - -0.4
573,995 + -0.1
573,995 + -0.3
574,004 + -0.1
574,004 + -0.9
574,004 + +0.8
574,004 + +1.4
574,004 + -0.2
574,004 + -1.2
574,037 + +0.2
574,053 - +0.1
574,057 + -0.5
574,057 + +0.2
574,058 - +0.4
574,058 - +0.5
574,060 + -0.5
574,060 + +1.6
574,061 - -0.4
574,061 - -0.1
574,106 - +0.2
574,106 - -0.0
574,108 - +0.4
574,139 - -0.1
574,193 - CA264_02470 0.14 -0.2
574,195 + CA264_02470 0.14 +0.3
574,313 - CA264_02470 0.22 -0.0
574,322 + CA264_02470 0.23 -0.1
574,372 - CA264_02470 0.26 +0.1
574,375 + CA264_02470 0.27 +0.4
574,437 + CA264_02470 0.31 +0.0
574,533 + CA264_02470 0.38 -0.4
574,533 + CA264_02470 0.38 -0.2
574,534 - CA264_02470 0.38 +0.0
574,681 + CA264_02470 0.48 -0.4
574,757 + CA264_02470 0.54 -0.3
574,815 + CA264_02470 0.58 +0.7
574,857 + CA264_02470 0.61 -0.5
574,907 + CA264_02470 0.65 -2.3
575,077 - CA264_02470 0.77 -1.9
575,108 - CA264_02470 0.79 +0.3
575,181 - CA264_02470 0.84 +0.3
575,253 + CA264_02470 0.89 -0.0
575,298 - -0.4
575,345 - -0.4
575,375 + -0.4
575,376 - -0.6
575,405 + +0.0
575,420 + -0.4
575,420 + +0.4
575,420 + -0.2
575,421 - +0.4
575,421 - -0.1
575,504 - CA264_02475 0.12 +0.2
575,529 + CA264_02475 0.14 -0.2
575,530 - CA264_02475 0.14 -0.3
575,597 - CA264_02475 0.19 -0.4
575,832 + CA264_02475 0.38 +1.0
575,921 - CA264_02475 0.44 -0.6
576,096 + CA264_02475 0.58 +0.9
576,097 - CA264_02475 0.58 +0.0
576,173 - CA264_02475 0.64 -0.5
576,302 - CA264_02475 0.74 +0.2
576,351 + CA264_02475 0.78 -0.2
576,352 - CA264_02475 0.78 -0.5
576,403 + CA264_02475 0.82 -0.2
576,403 + CA264_02475 0.82 -0.3

Or see this region's nucleotide sequence