Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17390

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17380 and ABIE41_RS17385 are separated by 12 nucleotidesABIE41_RS17385 and ABIE41_RS17390 overlap by 1 nucleotidesABIE41_RS17390 and ABIE41_RS17395 are separated by 61 nucleotides ABIE41_RS17380: ABIE41_RS17380 - amidohydrolase family protein, at 3,584,026 to 3,585,297 _RS17380 ABIE41_RS17385: ABIE41_RS17385 - hypothetical protein, at 3,585,310 to 3,585,726 _RS17385 ABIE41_RS17390: ABIE41_RS17390 - hypothetical protein, at 3,585,726 to 3,585,926 _RS17390 ABIE41_RS17395: ABIE41_RS17395 - ABC transporter ATP-binding protein, at 3,585,988 to 3,587,737 _RS17395 Position (kb) 3585 3586Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3584.728 kb on + strand, within ABIE41_RS17380at 3584.728 kb on + strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3586.590 kb on + strand, within ABIE41_RS17395at 3586.591 kb on - strand, within ABIE41_RS17395at 3586.837 kb on + strand, within ABIE41_RS17395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,584,728 + ABIE41_RS17380 0.55 -1.2
3,584,728 + ABIE41_RS17380 0.55 +0.1
3,584,858 - ABIE41_RS17380 0.65 -0.3
3,584,858 - ABIE41_RS17380 0.65 +0.3
3,584,858 - ABIE41_RS17380 0.65 -0.9
3,584,858 - ABIE41_RS17380 0.65 -0.2
3,584,858 - ABIE41_RS17380 0.65 -2.0
3,586,590 + ABIE41_RS17395 0.34 +3.1
3,586,591 - ABIE41_RS17395 0.34 +0.0
3,586,837 + ABIE41_RS17395 0.49 -0.9

Or see this region's nucleotide sequence