Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14320

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14310 and ABIE41_RS14315 are separated by 192 nucleotidesABIE41_RS14315 and ABIE41_RS14320 are separated by 73 nucleotidesABIE41_RS14320 and ABIE41_RS14325 are separated by 7 nucleotidesABIE41_RS14325 and ABIE41_RS14330 are separated by 101 nucleotides ABIE41_RS14310: ABIE41_RS14310 - type VI secretion system baseplate subunit TssK, at 2,935,033 to 2,936,370 _RS14310 ABIE41_RS14315: ABIE41_RS14315 - PAAR domain-containing protein, at 2,936,563 to 2,937,063 _RS14315 ABIE41_RS14320: ABIE41_RS14320 - RidA family protein, at 2,937,137 to 2,937,496 _RS14320 ABIE41_RS14325: ABIE41_RS14325 - hypothetical protein, at 2,937,504 to 2,937,875 _RS14325 ABIE41_RS14330: ABIE41_RS14330 - type VI secretion system-associated FHA domain protein TagH, at 2,937,977 to 2,939,350 _RS14330 Position (kb) 2937 2938Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2936.168 kb on - strand, within ABIE41_RS14310at 2936.294 kb on + strandat 2936.295 kb on - strandat 2936.327 kb on - strandat 2936.360 kb on + strandat 2936.407 kb on + strandat 2936.408 kb on - strandat 2936.408 kb on - strandat 2936.409 kb on + strandat 2936.410 kb on - strandat 2936.443 kb on + strandat 2936.443 kb on + strandat 2936.443 kb on + strandat 2936.443 kb on + strandat 2936.443 kb on + strandat 2937.084 kb on - strandat 2937.084 kb on - strandat 2937.482 kb on - strandat 2937.489 kb on + strandat 2937.490 kb on - strandat 2937.490 kb on - strandat 2937.494 kb on + strandat 2937.494 kb on + strandat 2937.494 kb on + strandat 2937.495 kb on - strandat 2937.495 kb on - strandat 2937.669 kb on - strand, within ABIE41_RS14325at 2937.669 kb on - strand, within ABIE41_RS14325at 2937.669 kb on - strand, within ABIE41_RS14325at 2937.797 kb on - strand, within ABIE41_RS14325at 2937.797 kb on - strand, within ABIE41_RS14325at 2937.797 kb on - strand, within ABIE41_RS14325at 2937.894 kb on - strandat 2937.894 kb on - strandat 2937.978 kb on + strandat 2938.011 kb on + strandat 2938.077 kb on + strandat 2938.209 kb on + strand, within ABIE41_RS14330at 2938.210 kb on - strand, within ABIE41_RS14330at 2938.210 kb on - strand, within ABIE41_RS14330at 2938.276 kb on - strand, within ABIE41_RS14330

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,936,168 - ABIE41_RS14310 0.85 -3.1
2,936,294 + +0.3
2,936,295 - +0.4
2,936,327 - +1.1
2,936,360 + -0.5
2,936,407 + +0.3
2,936,408 - +0.1
2,936,408 - +0.2
2,936,409 + +0.2
2,936,410 - -0.3
2,936,443 + +0.1
2,936,443 + +0.8
2,936,443 + -1.3
2,936,443 + +1.9
2,936,443 + +0.7
2,937,084 - -0.0
2,937,084 - +0.3
2,937,482 - -1.7
2,937,489 + -1.6
2,937,490 - +1.0
2,937,490 - -1.3
2,937,494 + -1.8
2,937,494 + -0.8
2,937,494 + -3.1
2,937,495 - +0.4
2,937,495 - -1.8
2,937,669 - ABIE41_RS14325 0.44 -0.3
2,937,669 - ABIE41_RS14325 0.44 -0.3
2,937,669 - ABIE41_RS14325 0.44 +0.9
2,937,797 - ABIE41_RS14325 0.79 -0.6
2,937,797 - ABIE41_RS14325 0.79 -0.9
2,937,797 - ABIE41_RS14325 0.79 -0.4
2,937,894 - +0.6
2,937,894 - +0.9
2,937,978 + +0.6
2,938,011 + -0.0
2,938,077 + +1.3
2,938,209 + ABIE41_RS14330 0.17 +0.5
2,938,210 - ABIE41_RS14330 0.17 -0.1
2,938,210 - ABIE41_RS14330 0.17 -1.0
2,938,276 - ABIE41_RS14330 0.22 -1.0

Or see this region's nucleotide sequence