Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13690

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13685 and ABIE41_RS13690 are separated by 200 nucleotidesABIE41_RS13690 and ABIE41_RS13695 are separated by 56 nucleotides ABIE41_RS13685: ABIE41_RS13685 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,808,455 to 2,809,861 _RS13685 ABIE41_RS13690: ABIE41_RS13690 - carbon monoxide dehydrogenase subunit G, at 2,810,062 to 2,810,487 _RS13690 ABIE41_RS13695: ABIE41_RS13695 - methyl-accepting chemotaxis protein, at 2,810,544 to 2,811,902 _RS13695 Position (kb) 2810 2811Strain fitness (log2 ratio) -2 -1 0 1at 2809.314 kb on - strand, within ABIE41_RS13685at 2809.453 kb on + strand, within ABIE41_RS13685at 2809.453 kb on + strand, within ABIE41_RS13685at 2809.481 kb on - strand, within ABIE41_RS13685at 2809.917 kb on + strandat 2809.918 kb on - strandat 2809.960 kb on - strandat 2809.960 kb on - strandat 2809.995 kb on - strandat 2809.995 kb on - strandat 2810.420 kb on + strand, within ABIE41_RS13690at 2810.420 kb on + strand, within ABIE41_RS13690at 2810.421 kb on - strand, within ABIE41_RS13690at 2810.421 kb on - strand, within ABIE41_RS13690at 2810.421 kb on - strand, within ABIE41_RS13690at 2811.144 kb on - strand, within ABIE41_RS13695at 2811.144 kb on - strand, within ABIE41_RS13695

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,809,314 - ABIE41_RS13685 0.61 -0.5
2,809,453 + ABIE41_RS13685 0.71 +0.4
2,809,453 + ABIE41_RS13685 0.71 +0.4
2,809,481 - ABIE41_RS13685 0.73 -2.5
2,809,917 + +1.2
2,809,918 - +1.4
2,809,960 - +0.5
2,809,960 - +0.4
2,809,995 - +0.4
2,809,995 - -0.7
2,810,420 + ABIE41_RS13690 0.84 -0.7
2,810,420 + ABIE41_RS13690 0.84 +0.3
2,810,421 - ABIE41_RS13690 0.84 -0.1
2,810,421 - ABIE41_RS13690 0.84 +0.6
2,810,421 - ABIE41_RS13690 0.84 -0.9
2,811,144 - ABIE41_RS13695 0.44 +0.0
2,811,144 - ABIE41_RS13695 0.44 +0.4

Or see this region's nucleotide sequence