Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04155

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04150 and ABIE41_RS04155 are separated by 33 nucleotidesABIE41_RS04155 and ABIE41_RS04160 are separated by 120 nucleotides ABIE41_RS04150: ABIE41_RS04150 - methyl-accepting chemotaxis protein, at 857,901 to 860,255 _RS04150 ABIE41_RS04155: ABIE41_RS04155 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 860,289 to 862,727 _RS04155 ABIE41_RS04160: ABIE41_RS04160 - DNA helicase RecQ, at 862,848 to 864,686 _RS04160 Position (kb) 860 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1at 859.414 kb on - strand, within ABIE41_RS04150at 862.787 kb on - strandat 862.787 kb on - strandat 862.789 kb on - strandat 862.826 kb on + strandat 862.892 kb on - strandat 862.892 kb on - strandat 862.999 kb on + strandat 862.999 kb on + strandat 862.999 kb on + strandat 862.999 kb on + strandat 863.000 kb on - strandat 863.000 kb on - strandat 863.320 kb on - strand, within ABIE41_RS04160at 863.533 kb on + strand, within ABIE41_RS04160at 863.534 kb on - strand, within ABIE41_RS04160at 863.534 kb on - strand, within ABIE41_RS04160at 863.534 kb on - strand, within ABIE41_RS04160at 863.680 kb on + strand, within ABIE41_RS04160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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859,414 - ABIE41_RS04150 0.64 -0.7
862,787 - +0.3
862,787 - -1.1
862,789 - +0.3
862,826 + -0.5
862,892 - -1.3
862,892 - +1.2
862,999 + -1.4
862,999 + -0.2
862,999 + +0.5
862,999 + +1.5
863,000 - -0.0
863,000 - +0.7
863,320 - ABIE41_RS04160 0.26 -2.1
863,533 + ABIE41_RS04160 0.37 +0.8
863,534 - ABIE41_RS04160 0.37 -0.9
863,534 - ABIE41_RS04160 0.37 +0.8
863,534 - ABIE41_RS04160 0.37 -1.1
863,680 + ABIE41_RS04160 0.45 -2.9

Or see this region's nucleotide sequence