Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01565 and ABIE41_RS01570 overlap by 4 nucleotides ABIE41_RS01570 and ABIE41_RS01575 overlap by 4 nucleotides ABIE41_RS01575 and ABIE41_RS01580 are separated by 140 nucleotides
ABIE41_RS01565: ABIE41_RS01565 - ABC transporter permease, at 311,963 to 312,763
_RS01565
ABIE41_RS01570: ABIE41_RS01570 - ABC transporter permease, at 312,760 to 313,626
_RS01570
ABIE41_RS01575: ABIE41_RS01575 - ABC transporter ATP-binding protein, at 313,623 to 314,666
_RS01575
ABIE41_RS01580: ABIE41_RS01580 - polyamine ABC transporter substrate-binding protein, at 314,807 to 315,844
_RS01580
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 312.657 kb on + strand, within ABIE41_RS01565 at 312.657 kb on + strand, within ABIE41_RS01565 at 312.657 kb on + strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.780 kb on - strand at 312.893 kb on + strand, within ABIE41_RS01570 at 312.893 kb on + strand, within ABIE41_RS01570 at 312.894 kb on - strand, within ABIE41_RS01570 at 313.350 kb on + strand, within ABIE41_RS01570 at 313.351 kb on - strand, within ABIE41_RS01570 at 313.351 kb on - strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.352 kb on + strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.353 kb on - strand, within ABIE41_RS01570 at 313.436 kb on + strand, within ABIE41_RS01570 at 313.436 kb on + strand, within ABIE41_RS01570 at 313.436 kb on + strand, within ABIE41_RS01570 at 313.437 kb on - strand, within ABIE41_RS01570 at 313.496 kb on + strand, within ABIE41_RS01570 at 313.496 kb on + strand, within ABIE41_RS01570 at 313.496 kb on + strand, within ABIE41_RS01570 at 313.496 kb on + strand, within ABIE41_RS01570 at 313.497 kb on - strand, within ABIE41_RS01570 at 313.497 kb on - strand, within ABIE41_RS01570 at 313.497 kb on - strand, within ABIE41_RS01570 at 313.511 kb on + strand, within ABIE41_RS01570 at 313.511 kb on + strand, within ABIE41_RS01570 at 313.512 kb on - strand, within ABIE41_RS01570 at 314.002 kb on + strand, within ABIE41_RS01575 at 314.002 kb on + strand, within ABIE41_RS01575 at 314.002 kb on + strand, within ABIE41_RS01575 at 314.002 kb on + strand, within ABIE41_RS01575 at 314.002 kb on + strand, within ABIE41_RS01575 at 314.002 kb on + strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.003 kb on - strand, within ABIE41_RS01575 at 314.327 kb on + strand, within ABIE41_RS01575 at 314.327 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.416 kb on + strand, within ABIE41_RS01575 at 314.675 kb on - strand at 314.808 kb on + strand at 314.809 kb on - strand at 314.809 kb on - strand at 314.907 kb on + strand at 314.907 kb on + strand at 314.989 kb on + strand, within ABIE41_RS01580 at 315.222 kb on + strand, within ABIE41_RS01580 at 315.222 kb on + strand, within ABIE41_RS01580 at 315.223 kb on - strand, within ABIE41_RS01580 at 315.223 kb on - strand, within ABIE41_RS01580 at 315.333 kb on + strand, within ABIE41_RS01580 at 315.333 kb on + strand, within ABIE41_RS01580 at 315.334 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.445 kb on - strand, within ABIE41_RS01580 at 315.445 kb on - strand, within ABIE41_RS01580 at 315.522 kb on + strand, within ABIE41_RS01580 at 315.605 kb on + strand, within ABIE41_RS01580 at 315.665 kb on + strand, within ABIE41_RS01580 at 315.666 kb on - strand, within ABIE41_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 312,657 + ABIE41_RS01565 0.87 +0.9 312,657 + ABIE41_RS01565 0.87 +2.0 312,657 + ABIE41_RS01565 0.87 -2.6 312,658 - ABIE41_RS01565 0.87 +0.3 312,658 - ABIE41_RS01565 0.87 -0.8 312,658 - ABIE41_RS01565 0.87 -0.5 312,658 - ABIE41_RS01565 0.87 +1.4 312,780 - +0.6 312,893 + ABIE41_RS01570 0.15 +0.3 312,893 + ABIE41_RS01570 0.15 -1.8 312,894 - ABIE41_RS01570 0.15 -2.3 313,350 + ABIE41_RS01570 0.68 +1.2 313,351 - ABIE41_RS01570 0.68 +0.8 313,351 - ABIE41_RS01570 0.68 -0.3 313,352 + ABIE41_RS01570 0.68 -1.9 313,352 + ABIE41_RS01570 0.68 +0.2 313,352 + ABIE41_RS01570 0.68 +1.6 313,352 + ABIE41_RS01570 0.68 -0.6 313,352 + ABIE41_RS01570 0.68 -2.1 313,352 + ABIE41_RS01570 0.68 +2.0 313,352 + ABIE41_RS01570 0.68 -0.8 313,352 + ABIE41_RS01570 0.68 -1.8 313,352 + ABIE41_RS01570 0.68 -1.3 313,352 + ABIE41_RS01570 0.68 +0.2 313,352 + ABIE41_RS01570 0.68 -0.6 313,353 - ABIE41_RS01570 0.68 -1.8 313,353 - ABIE41_RS01570 0.68 -2.0 313,353 - ABIE41_RS01570 0.68 -0.4 313,353 - ABIE41_RS01570 0.68 -1.3 313,353 - ABIE41_RS01570 0.68 +1.7 313,353 - ABIE41_RS01570 0.68 +0.2 313,353 - ABIE41_RS01570 0.68 +2.0 313,353 - ABIE41_RS01570 0.68 +0.4 313,353 - ABIE41_RS01570 0.68 -0.8 313,353 - ABIE41_RS01570 0.68 +0.4 313,436 + ABIE41_RS01570 0.78 +0.2 313,436 + ABIE41_RS01570 0.78 -0.4 313,436 + ABIE41_RS01570 0.78 +1.0 313,437 - ABIE41_RS01570 0.78 +0.6 313,496 + ABIE41_RS01570 0.85 -1.7 313,496 + ABIE41_RS01570 0.85 +0.3 313,496 + ABIE41_RS01570 0.85 +0.6 313,496 + ABIE41_RS01570 0.85 +1.0 313,497 - ABIE41_RS01570 0.85 +0.5 313,497 - ABIE41_RS01570 0.85 +0.0 313,497 - ABIE41_RS01570 0.85 +0.9 313,511 + ABIE41_RS01570 0.87 -0.8 313,511 + ABIE41_RS01570 0.87 -0.0 313,512 - ABIE41_RS01570 0.87 -1.8 314,002 + ABIE41_RS01575 0.36 +0.1 314,002 + ABIE41_RS01575 0.36 -0.6 314,002 + ABIE41_RS01575 0.36 -0.6 314,002 + ABIE41_RS01575 0.36 +0.8 314,002 + ABIE41_RS01575 0.36 -1.9 314,002 + ABIE41_RS01575 0.36 -1.2 314,003 - ABIE41_RS01575 0.36 +0.3 314,003 - ABIE41_RS01575 0.36 -2.7 314,003 - ABIE41_RS01575 0.36 -0.3 314,003 - ABIE41_RS01575 0.36 +0.3 314,003 - ABIE41_RS01575 0.36 -1.9 314,003 - ABIE41_RS01575 0.36 +2.0 314,003 - ABIE41_RS01575 0.36 +1.7 314,003 - ABIE41_RS01575 0.36 -0.1 314,327 + ABIE41_RS01575 0.67 +0.7 314,327 + ABIE41_RS01575 0.67 -1.1 314,416 + ABIE41_RS01575 0.76 +0.3 314,416 + ABIE41_RS01575 0.76 -0.3 314,416 + ABIE41_RS01575 0.76 -1.2 314,416 + ABIE41_RS01575 0.76 -0.2 314,416 + ABIE41_RS01575 0.76 +0.8 314,416 + ABIE41_RS01575 0.76 +1.8 314,416 + ABIE41_RS01575 0.76 -0.8 314,416 + ABIE41_RS01575 0.76 +1.5 314,416 + ABIE41_RS01575 0.76 +1.2 314,675 - -0.8 314,808 + +1.8 314,809 - -1.2 314,809 - +1.4 314,907 + -1.2 314,907 + -1.1 314,989 + ABIE41_RS01580 0.18 +0.3 315,222 + ABIE41_RS01580 0.40 +0.8 315,222 + ABIE41_RS01580 0.40 +1.5 315,223 - ABIE41_RS01580 0.40 -0.0 315,223 - ABIE41_RS01580 0.40 -2.0 315,333 + ABIE41_RS01580 0.51 -1.8 315,333 + ABIE41_RS01580 0.51 -1.0 315,334 - ABIE41_RS01580 0.51 -1.4 315,373 - ABIE41_RS01580 0.55 +0.6 315,373 - ABIE41_RS01580 0.55 +0.4 315,373 - ABIE41_RS01580 0.55 +1.3 315,373 - ABIE41_RS01580 0.55 +0.1 315,445 - ABIE41_RS01580 0.61 -1.6 315,445 - ABIE41_RS01580 0.61 -2.8 315,522 + ABIE41_RS01580 0.69 -1.5 315,605 + ABIE41_RS01580 0.77 +0.6 315,665 + ABIE41_RS01580 0.83 -1.0 315,666 - ABIE41_RS01580 0.83 -0.9
Or see this region's nucleotide sequence