Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30780

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30775 and ABIE40_RS30780 are separated by 482 nucleotidesABIE40_RS30780 and ABIE40_RS30785 are separated by 6 nucleotides ABIE40_RS30775: ABIE40_RS30775 - ferritin-like domain-containing protein, at 843,125 to 843,637 _RS30775 ABIE40_RS30780: ABIE40_RS30780 - malto-oligosyltrehalose trehalohydrolase, at 844,120 to 845,901 _RS30780 ABIE40_RS30785: ABIE40_RS30785 - 4-alpha-glucanotransferase, at 845,908 to 847,791 _RS30785 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 843.126 kb on + strandat 843.127 kb on - strandat 843.217 kb on + strand, within ABIE40_RS30775at 843.297 kb on + strand, within ABIE40_RS30775at 843.640 kb on + strandat 843.829 kb on + strandat 843.830 kb on - strandat 843.936 kb on + strandat 843.984 kb on + strandat 843.991 kb on - strandat 844.011 kb on + strandat 844.011 kb on + strandat 844.011 kb on + strandat 844.011 kb on + strandat 844.093 kb on + strandat 844.103 kb on - strandat 844.108 kb on + strandat 844.108 kb on + strandat 844.109 kb on - strandat 844.150 kb on + strandat 844.150 kb on + strandat 844.151 kb on - strandat 844.297 kb on + strandat 844.299 kb on + strand, within ABIE40_RS30780at 844.453 kb on + strand, within ABIE40_RS30780at 844.583 kb on - strand, within ABIE40_RS30780at 844.595 kb on - strand, within ABIE40_RS30780at 844.595 kb on - strand, within ABIE40_RS30780at 844.595 kb on - strand, within ABIE40_RS30780at 844.612 kb on + strand, within ABIE40_RS30780at 844.630 kb on + strand, within ABIE40_RS30780at 844.630 kb on + strand, within ABIE40_RS30780at 844.630 kb on + strand, within ABIE40_RS30780at 844.630 kb on + strand, within ABIE40_RS30780at 844.631 kb on - strand, within ABIE40_RS30780at 844.709 kb on - strand, within ABIE40_RS30780at 844.735 kb on + strand, within ABIE40_RS30780at 844.735 kb on + strand, within ABIE40_RS30780at 844.748 kb on - strand, within ABIE40_RS30780at 844.801 kb on + strand, within ABIE40_RS30780at 844.901 kb on + strand, within ABIE40_RS30780at 845.084 kb on + strand, within ABIE40_RS30780at 845.085 kb on - strand, within ABIE40_RS30780at 845.085 kb on - strand, within ABIE40_RS30780at 845.100 kb on + strand, within ABIE40_RS30780at 845.101 kb on - strand, within ABIE40_RS30780at 845.132 kb on - strand, within ABIE40_RS30780at 845.140 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.212 kb on + strand, within ABIE40_RS30780at 845.267 kb on + strand, within ABIE40_RS30780at 845.268 kb on - strand, within ABIE40_RS30780at 845.319 kb on + strand, within ABIE40_RS30780at 845.320 kb on - strand, within ABIE40_RS30780at 845.325 kb on + strand, within ABIE40_RS30780at 845.326 kb on - strand, within ABIE40_RS30780at 845.326 kb on - strand, within ABIE40_RS30780at 845.368 kb on + strand, within ABIE40_RS30780at 845.368 kb on + strand, within ABIE40_RS30780at 845.369 kb on - strand, within ABIE40_RS30780at 845.369 kb on - strand, within ABIE40_RS30780at 845.391 kb on + strand, within ABIE40_RS30780at 845.391 kb on + strand, within ABIE40_RS30780at 845.392 kb on - strand, within ABIE40_RS30780at 845.400 kb on + strand, within ABIE40_RS30780at 845.985 kb on + strandat 845.985 kb on + strandat 845.986 kb on - strandat 845.986 kb on - strandat 846.109 kb on - strand, within ABIE40_RS30785at 846.380 kb on - strand, within ABIE40_RS30785at 846.380 kb on - strand, within ABIE40_RS30785at 846.753 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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843,126 + -0.3
843,127 - -2.1
843,217 + ABIE40_RS30775 0.18 -0.7
843,297 + ABIE40_RS30775 0.34 +0.7
843,640 + -0.5
843,829 + +0.9
843,830 - +0.0
843,936 + +1.9
843,984 + +0.4
843,991 - -0.3
844,011 + -0.1
844,011 + +0.0
844,011 + -2.1
844,011 + +1.5
844,093 + +2.0
844,103 - -1.9
844,108 + +0.3
844,108 + +0.1
844,109 - -1.0
844,150 + -0.6
844,150 + +1.7
844,151 - -0.0
844,297 + +0.4
844,299 + ABIE40_RS30780 0.10 -0.6
844,453 + ABIE40_RS30780 0.19 +1.0
844,583 - ABIE40_RS30780 0.26 -0.5
844,595 - ABIE40_RS30780 0.27 +0.3
844,595 - ABIE40_RS30780 0.27 +0.1
844,595 - ABIE40_RS30780 0.27 -0.7
844,612 + ABIE40_RS30780 0.28 -0.6
844,630 + ABIE40_RS30780 0.29 +0.3
844,630 + ABIE40_RS30780 0.29 +0.5
844,630 + ABIE40_RS30780 0.29 +0.0
844,630 + ABIE40_RS30780 0.29 +0.0
844,631 - ABIE40_RS30780 0.29 +1.3
844,709 - ABIE40_RS30780 0.33 -0.5
844,735 + ABIE40_RS30780 0.35 -1.1
844,735 + ABIE40_RS30780 0.35 -0.1
844,748 - ABIE40_RS30780 0.35 -0.4
844,801 + ABIE40_RS30780 0.38 -0.1
844,901 + ABIE40_RS30780 0.44 -0.3
845,084 + ABIE40_RS30780 0.54 +0.1
845,085 - ABIE40_RS30780 0.54 +1.1
845,085 - ABIE40_RS30780 0.54 -0.1
845,100 + ABIE40_RS30780 0.55 +1.4
845,101 - ABIE40_RS30780 0.55 +0.0
845,132 - ABIE40_RS30780 0.57 -0.1
845,140 + ABIE40_RS30780 0.57 +1.3
845,205 + ABIE40_RS30780 0.61 +1.7
845,205 + ABIE40_RS30780 0.61 -0.2
845,205 + ABIE40_RS30780 0.61 -1.7
845,205 + ABIE40_RS30780 0.61 +0.1
845,206 - ABIE40_RS30780 0.61 +0.2
845,206 - ABIE40_RS30780 0.61 +0.4
845,206 - ABIE40_RS30780 0.61 +1.4
845,206 - ABIE40_RS30780 0.61 -0.9
845,212 + ABIE40_RS30780 0.61 -0.2
845,267 + ABIE40_RS30780 0.64 +0.7
845,268 - ABIE40_RS30780 0.64 +0.4
845,319 + ABIE40_RS30780 0.67 +0.5
845,320 - ABIE40_RS30780 0.67 -0.5
845,325 + ABIE40_RS30780 0.68 +1.4
845,326 - ABIE40_RS30780 0.68 +1.2
845,326 - ABIE40_RS30780 0.68 -2.3
845,368 + ABIE40_RS30780 0.70 -0.6
845,368 + ABIE40_RS30780 0.70 -1.1
845,369 - ABIE40_RS30780 0.70 -0.4
845,369 - ABIE40_RS30780 0.70 +0.1
845,391 + ABIE40_RS30780 0.71 -0.3
845,391 + ABIE40_RS30780 0.71 +1.3
845,392 - ABIE40_RS30780 0.71 -0.4
845,400 + ABIE40_RS30780 0.72 -0.5
845,985 + +0.1
845,985 + +0.0
845,986 - -1.4
845,986 - -0.2
846,109 - ABIE40_RS30785 0.11 -2.1
846,380 - ABIE40_RS30785 0.25 +2.1
846,380 - ABIE40_RS30785 0.25 -2.4
846,753 + ABIE40_RS30785 0.45 +0.1
846,898 + ABIE40_RS30785 0.53 -1.0
846,898 + ABIE40_RS30785 0.53 +0.5
846,898 + ABIE40_RS30785 0.53 -0.0
846,898 + ABIE40_RS30785 0.53 -1.2
846,899 - ABIE40_RS30785 0.53 -0.5
846,899 - ABIE40_RS30785 0.53 -0.3
846,899 - ABIE40_RS30785 0.53 -1.9
846,899 - ABIE40_RS30785 0.53 -0.7

Or see this region's nucleotide sequence