Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24890

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS24885 and ABIE40_RS24890 are separated by 3 nucleotidesABIE40_RS24890 and ABIE40_RS24895 overlap by 4 nucleotides ABIE40_RS24885: ABIE40_RS24885 - poly(glycerol-phosphate) alpha-glucosyltransferase, at 1,134,938 to 1,136,680 _RS24885 ABIE40_RS24890: ABIE40_RS24890 - HlyD family type I secretion periplasmic adaptor subunit, at 1,136,684 to 1,137,880 _RS24890 ABIE40_RS24895: ABIE40_RS24895 - type I secretion system permease/ATPase, at 1,137,877 to 1,140,150 _RS24895 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1135.905 kb on + strand, within ABIE40_RS24885at 1135.906 kb on - strand, within ABIE40_RS24885at 1135.923 kb on + strand, within ABIE40_RS24885at 1135.924 kb on - strand, within ABIE40_RS24885at 1135.948 kb on + strand, within ABIE40_RS24885at 1135.948 kb on + strand, within ABIE40_RS24885at 1135.948 kb on + strand, within ABIE40_RS24885at 1135.948 kb on + strand, within ABIE40_RS24885at 1135.948 kb on + strand, within ABIE40_RS24885at 1135.948 kb on + strand, within ABIE40_RS24885at 1135.949 kb on - strand, within ABIE40_RS24885at 1135.949 kb on - strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.953 kb on + strand, within ABIE40_RS24885at 1135.954 kb on - strand, within ABIE40_RS24885at 1135.954 kb on - strand, within ABIE40_RS24885at 1135.954 kb on - strand, within ABIE40_RS24885at 1135.954 kb on - strand, within ABIE40_RS24885at 1135.954 kb on - strand, within ABIE40_RS24885at 1135.954 kb on - strand, within ABIE40_RS24885at 1135.992 kb on + strand, within ABIE40_RS24885at 1136.086 kb on + strand, within ABIE40_RS24885at 1136.089 kb on + strand, within ABIE40_RS24885at 1136.089 kb on + strand, within ABIE40_RS24885at 1136.089 kb on + strand, within ABIE40_RS24885at 1136.089 kb on + strand, within ABIE40_RS24885at 1136.089 kb on + strand, within ABIE40_RS24885at 1136.090 kb on - strand, within ABIE40_RS24885at 1136.179 kb on + strand, within ABIE40_RS24885at 1136.229 kb on + strand, within ABIE40_RS24885at 1136.269 kb on + strand, within ABIE40_RS24885at 1136.269 kb on + strand, within ABIE40_RS24885at 1136.270 kb on - strand, within ABIE40_RS24885at 1136.283 kb on + strand, within ABIE40_RS24885at 1136.283 kb on + strand, within ABIE40_RS24885at 1136.284 kb on - strand, within ABIE40_RS24885at 1136.284 kb on - strand, within ABIE40_RS24885at 1136.284 kb on - strand, within ABIE40_RS24885at 1136.364 kb on + strand, within ABIE40_RS24885at 1136.365 kb on - strand, within ABIE40_RS24885at 1136.598 kb on + strandat 1136.598 kb on + strandat 1136.733 kb on + strandat 1136.734 kb on - strandat 1136.758 kb on + strandat 1136.758 kb on + strandat 1136.758 kb on + strandat 1136.759 kb on - strandat 1136.759 kb on - strandat 1136.759 kb on - strandat 1136.856 kb on + strand, within ABIE40_RS24890at 1136.856 kb on + strand, within ABIE40_RS24890at 1136.856 kb on + strand, within ABIE40_RS24890at 1136.859 kb on + strand, within ABIE40_RS24890at 1136.859 kb on + strand, within ABIE40_RS24890at 1136.860 kb on - strand, within ABIE40_RS24890at 1136.860 kb on - strand, within ABIE40_RS24890at 1136.860 kb on - strand, within ABIE40_RS24890at 1136.860 kb on - strand, within ABIE40_RS24890at 1136.862 kb on + strand, within ABIE40_RS24890at 1136.863 kb on - strand, within ABIE40_RS24890at 1136.863 kb on - strand, within ABIE40_RS24890at 1136.863 kb on - strand, within ABIE40_RS24890at 1136.894 kb on - strand, within ABIE40_RS24890at 1136.935 kb on - strand, within ABIE40_RS24890at 1136.943 kb on + strand, within ABIE40_RS24890at 1136.949 kb on + strand, within ABIE40_RS24890at 1136.999 kb on - strand, within ABIE40_RS24890at 1137.047 kb on + strand, within ABIE40_RS24890at 1137.048 kb on - strand, within ABIE40_RS24890at 1137.107 kb on - strand, within ABIE40_RS24890at 1137.152 kb on + strand, within ABIE40_RS24890at 1137.240 kb on + strand, within ABIE40_RS24890at 1137.240 kb on + strand, within ABIE40_RS24890at 1137.240 kb on + strand, within ABIE40_RS24890at 1137.240 kb on + strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.241 kb on - strand, within ABIE40_RS24890at 1137.387 kb on - strand, within ABIE40_RS24890at 1137.429 kb on + strand, within ABIE40_RS24890at 1137.430 kb on - strand, within ABIE40_RS24890at 1137.546 kb on + strand, within ABIE40_RS24890at 1137.547 kb on - strand, within ABIE40_RS24890at 1137.744 kb on - strand, within ABIE40_RS24890at 1137.847 kb on + strandat 1137.847 kb on + strandat 1137.847 kb on + strandat 1137.847 kb on + strandat 1137.847 kb on + strandat 1137.848 kb on - strandat 1137.848 kb on - strandat 1137.848 kb on - strandat 1138.388 kb on - strand, within ABIE40_RS24895at 1138.640 kb on + strand, within ABIE40_RS24895at 1138.640 kb on + strand, within ABIE40_RS24895at 1138.641 kb on - strand, within ABIE40_RS24895at 1138.641 kb on - strand, within ABIE40_RS24895at 1138.641 kb on - strand, within ABIE40_RS24895at 1138.643 kb on + strand, within ABIE40_RS24895at 1138.643 kb on + strand, within ABIE40_RS24895at 1138.643 kb on + strand, within ABIE40_RS24895at 1138.643 kb on + strand, within ABIE40_RS24895at 1138.644 kb on - strand, within ABIE40_RS24895at 1138.644 kb on - strand, within ABIE40_RS24895at 1138.644 kb on - strand, within ABIE40_RS24895at 1138.644 kb on - strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.650 kb on + strand, within ABIE40_RS24895at 1138.651 kb on - strand, within ABIE40_RS24895at 1138.728 kb on - strand, within ABIE40_RS24895at 1138.738 kb on - strand, within ABIE40_RS24895at 1138.860 kb on + strand, within ABIE40_RS24895

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,135,905 + ABIE40_RS24885 0.55 -0.3
1,135,906 - ABIE40_RS24885 0.56 -0.3
1,135,923 + ABIE40_RS24885 0.57 -1.0
1,135,924 - ABIE40_RS24885 0.57 -0.0
1,135,948 + ABIE40_RS24885 0.58 -0.0
1,135,948 + ABIE40_RS24885 0.58 -1.8
1,135,948 + ABIE40_RS24885 0.58 +1.2
1,135,948 + ABIE40_RS24885 0.58 +0.2
1,135,948 + ABIE40_RS24885 0.58 +1.5
1,135,948 + ABIE40_RS24885 0.58 -1.1
1,135,949 - ABIE40_RS24885 0.58 +0.7
1,135,949 - ABIE40_RS24885 0.58 +0.3
1,135,953 + ABIE40_RS24885 0.58 +0.4
1,135,953 + ABIE40_RS24885 0.58 +0.5
1,135,953 + ABIE40_RS24885 0.58 -0.0
1,135,953 + ABIE40_RS24885 0.58 +0.7
1,135,953 + ABIE40_RS24885 0.58 +0.9
1,135,953 + ABIE40_RS24885 0.58 -0.1
1,135,953 + ABIE40_RS24885 0.58 +0.6
1,135,953 + ABIE40_RS24885 0.58 +0.0
1,135,953 + ABIE40_RS24885 0.58 -0.2
1,135,954 - ABIE40_RS24885 0.58 -0.2
1,135,954 - ABIE40_RS24885 0.58 -0.8
1,135,954 - ABIE40_RS24885 0.58 -0.8
1,135,954 - ABIE40_RS24885 0.58 -0.5
1,135,954 - ABIE40_RS24885 0.58 +0.1
1,135,954 - ABIE40_RS24885 0.58 -0.1
1,135,992 + ABIE40_RS24885 0.60 -0.6
1,136,086 + ABIE40_RS24885 0.66 +0.3
1,136,089 + ABIE40_RS24885 0.66 -1.1
1,136,089 + ABIE40_RS24885 0.66 +0.2
1,136,089 + ABIE40_RS24885 0.66 -0.1
1,136,089 + ABIE40_RS24885 0.66 +0.6
1,136,089 + ABIE40_RS24885 0.66 -0.9
1,136,090 - ABIE40_RS24885 0.66 -1.9
1,136,179 + ABIE40_RS24885 0.71 -0.3
1,136,229 + ABIE40_RS24885 0.74 +0.1
1,136,269 + ABIE40_RS24885 0.76 +0.2
1,136,269 + ABIE40_RS24885 0.76 +0.1
1,136,270 - ABIE40_RS24885 0.76 -0.1
1,136,283 + ABIE40_RS24885 0.77 -0.4
1,136,283 + ABIE40_RS24885 0.77 -0.6
1,136,284 - ABIE40_RS24885 0.77 +0.9
1,136,284 - ABIE40_RS24885 0.77 -0.1
1,136,284 - ABIE40_RS24885 0.77 -0.3
1,136,364 + ABIE40_RS24885 0.82 -0.8
1,136,365 - ABIE40_RS24885 0.82 +0.4
1,136,598 + -2.1
1,136,598 + -0.0
1,136,733 + -0.7
1,136,734 - -0.7
1,136,758 + +0.7
1,136,758 + -1.8
1,136,758 + +1.9
1,136,759 - +0.4
1,136,759 - -0.7
1,136,759 - -0.1
1,136,856 + ABIE40_RS24890 0.14 +1.1
1,136,856 + ABIE40_RS24890 0.14 +0.1
1,136,856 + ABIE40_RS24890 0.14 +1.6
1,136,859 + ABIE40_RS24890 0.15 +1.0
1,136,859 + ABIE40_RS24890 0.15 +0.2
1,136,860 - ABIE40_RS24890 0.15 +0.2
1,136,860 - ABIE40_RS24890 0.15 +0.9
1,136,860 - ABIE40_RS24890 0.15 -2.3
1,136,860 - ABIE40_RS24890 0.15 -0.8
1,136,862 + ABIE40_RS24890 0.15 -0.0
1,136,863 - ABIE40_RS24890 0.15 -0.3
1,136,863 - ABIE40_RS24890 0.15 +0.6
1,136,863 - ABIE40_RS24890 0.15 +0.1
1,136,894 - ABIE40_RS24890 0.18 +4.4
1,136,935 - ABIE40_RS24890 0.21 -1.3
1,136,943 + ABIE40_RS24890 0.22 -0.5
1,136,949 + ABIE40_RS24890 0.22 +0.1
1,136,999 - ABIE40_RS24890 0.26 +0.8
1,137,047 + ABIE40_RS24890 0.30 +2.2
1,137,048 - ABIE40_RS24890 0.30 +1.3
1,137,107 - ABIE40_RS24890 0.35 -0.6
1,137,152 + ABIE40_RS24890 0.39 +2.0
1,137,240 + ABIE40_RS24890 0.46 -0.4
1,137,240 + ABIE40_RS24890 0.46 -0.4
1,137,240 + ABIE40_RS24890 0.46 -0.7
1,137,240 + ABIE40_RS24890 0.46 -0.8
1,137,241 - ABIE40_RS24890 0.47 +0.4
1,137,241 - ABIE40_RS24890 0.47 +0.6
1,137,241 - ABIE40_RS24890 0.47 +0.8
1,137,241 - ABIE40_RS24890 0.47 -0.6
1,137,241 - ABIE40_RS24890 0.47 -0.9
1,137,241 - ABIE40_RS24890 0.47 -0.5
1,137,241 - ABIE40_RS24890 0.47 -0.5
1,137,241 - ABIE40_RS24890 0.47 +0.6
1,137,241 - ABIE40_RS24890 0.47 -2.3
1,137,241 - ABIE40_RS24890 0.47 -0.3
1,137,387 - ABIE40_RS24890 0.59 +0.2
1,137,429 + ABIE40_RS24890 0.62 -1.8
1,137,430 - ABIE40_RS24890 0.62 -1.3
1,137,546 + ABIE40_RS24890 0.72 -0.5
1,137,547 - ABIE40_RS24890 0.72 -0.8
1,137,744 - ABIE40_RS24890 0.89 -0.1
1,137,847 + -1.2
1,137,847 + -0.8
1,137,847 + +0.4
1,137,847 + +0.4
1,137,847 + +0.7
1,137,848 - -0.3
1,137,848 - +0.4
1,137,848 - +0.8
1,138,388 - ABIE40_RS24895 0.22 +0.3
1,138,640 + ABIE40_RS24895 0.34 -0.9
1,138,640 + ABIE40_RS24895 0.34 -0.4
1,138,641 - ABIE40_RS24895 0.34 -2.1
1,138,641 - ABIE40_RS24895 0.34 +1.1
1,138,641 - ABIE40_RS24895 0.34 -1.6
1,138,643 + ABIE40_RS24895 0.34 -0.6
1,138,643 + ABIE40_RS24895 0.34 -0.2
1,138,643 + ABIE40_RS24895 0.34 -0.4
1,138,643 + ABIE40_RS24895 0.34 +2.5
1,138,644 - ABIE40_RS24895 0.34 -0.5
1,138,644 - ABIE40_RS24895 0.34 +0.8
1,138,644 - ABIE40_RS24895 0.34 +0.2
1,138,644 - ABIE40_RS24895 0.34 +0.7
1,138,650 + ABIE40_RS24895 0.34 +1.7
1,138,650 + ABIE40_RS24895 0.34 -2.0
1,138,650 + ABIE40_RS24895 0.34 -0.9
1,138,650 + ABIE40_RS24895 0.34 +1.4
1,138,650 + ABIE40_RS24895 0.34 -0.9
1,138,650 + ABIE40_RS24895 0.34 -0.7
1,138,650 + ABIE40_RS24895 0.34 -0.1
1,138,651 - ABIE40_RS24895 0.34 -0.7
1,138,728 - ABIE40_RS24895 0.37 -2.1
1,138,738 - ABIE40_RS24895 0.38 -1.1
1,138,860 + ABIE40_RS24895 0.43 -0.7

Or see this region's nucleotide sequence