Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22925

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22920 and ABIE40_RS22925 are separated by 17 nucleotidesABIE40_RS22925 and ABIE40_RS22930 are separated by 7 nucleotidesABIE40_RS22930 and ABIE40_RS22935 are separated by 19 nucleotides ABIE40_RS22920: ABIE40_RS22920 - LLM class flavin-dependent oxidoreductase, at 730,132 to 731,481 _RS22920 ABIE40_RS22925: ABIE40_RS22925 - M20 aminoacylase family protein, at 731,499 to 732,698 _RS22925 ABIE40_RS22930: ABIE40_RS22930 - GNAT family N-acetyltransferase, at 732,706 to 733,251 _RS22930 ABIE40_RS22935: ABIE40_RS22935 - amino acid ABC transporter permease/ATP-binding protein, at 733,271 to 735,049 _RS22935 Position (kb) 731 732 733Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 730.537 kb on + strand, within ABIE40_RS22920at 730.537 kb on + strand, within ABIE40_RS22920at 730.538 kb on - strand, within ABIE40_RS22920at 730.538 kb on - strand, within ABIE40_RS22920at 730.538 kb on - strand, within ABIE40_RS22920at 730.570 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.589 kb on - strand, within ABIE40_RS22920at 730.589 kb on - strand, within ABIE40_RS22920at 730.590 kb on + strand, within ABIE40_RS22920at 730.590 kb on + strand, within ABIE40_RS22920at 730.590 kb on + strand, within ABIE40_RS22920at 730.591 kb on - strand, within ABIE40_RS22920at 730.591 kb on - strand, within ABIE40_RS22920at 730.663 kb on + strand, within ABIE40_RS22920at 730.663 kb on + strand, within ABIE40_RS22920at 730.664 kb on - strand, within ABIE40_RS22920at 730.664 kb on - strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.868 kb on - strand, within ABIE40_RS22920at 730.868 kb on - strand, within ABIE40_RS22920at 730.868 kb on - strand, within ABIE40_RS22920at 730.927 kb on + strand, within ABIE40_RS22920at 730.927 kb on + strand, within ABIE40_RS22920at 730.981 kb on + strand, within ABIE40_RS22920at 730.981 kb on + strand, within ABIE40_RS22920at 730.982 kb on - strand, within ABIE40_RS22920at 730.982 kb on - strand, within ABIE40_RS22920at 731.005 kb on - strand, within ABIE40_RS22920at 731.027 kb on - strand, within ABIE40_RS22920at 731.066 kb on - strand, within ABIE40_RS22920at 731.066 kb on - strand, within ABIE40_RS22920at 731.072 kb on + strand, within ABIE40_RS22920at 731.232 kb on + strand, within ABIE40_RS22920at 731.507 kb on - strandat 731.507 kb on - strandat 731.507 kb on - strandat 731.507 kb on - strandat 731.507 kb on - strandat 731.670 kb on + strand, within ABIE40_RS22925at 731.671 kb on - strand, within ABIE40_RS22925at 731.671 kb on - strand, within ABIE40_RS22925at 731.878 kb on - strand, within ABIE40_RS22925at 731.878 kb on - strand, within ABIE40_RS22925at 732.309 kb on + strand, within ABIE40_RS22925at 732.309 kb on + strand, within ABIE40_RS22925at 732.310 kb on - strand, within ABIE40_RS22925at 732.310 kb on - strand, within ABIE40_RS22925at 732.311 kb on + strand, within ABIE40_RS22925at 732.311 kb on + strand, within ABIE40_RS22925at 732.564 kb on + strand, within ABIE40_RS22925at 732.564 kb on + strand, within ABIE40_RS22925at 732.565 kb on - strand, within ABIE40_RS22925at 732.634 kb on + strandat 732.634 kb on + strandat 732.635 kb on - strandat 732.635 kb on - strandat 732.635 kb on - strandat 732.651 kb on + strandat 732.652 kb on - strandat 732.691 kb on + strandat 732.714 kb on + strandat 732.714 kb on + strandat 732.714 kb on + strandat 732.715 kb on - strandat 732.715 kb on - strandat 732.715 kb on - strandat 732.725 kb on - strandat 732.781 kb on + strand, within ABIE40_RS22930at 732.781 kb on + strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.802 kb on + strand, within ABIE40_RS22930at 732.803 kb on - strand, within ABIE40_RS22930at 732.803 kb on - strand, within ABIE40_RS22930at 732.931 kb on + strand, within ABIE40_RS22930at 732.931 kb on + strand, within ABIE40_RS22930at 733.046 kb on - strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.099 kb on + strand, within ABIE40_RS22930at 733.100 kb on - strand, within ABIE40_RS22930at 733.100 kb on - strand, within ABIE40_RS22930at 733.115 kb on - strand, within ABIE40_RS22930at 733.153 kb on + strand, within ABIE40_RS22930at 733.154 kb on - strand, within ABIE40_RS22930at 733.194 kb on + strand, within ABIE40_RS22930at 733.212 kb on + strandat 733.213 kb on - strandat 733.213 kb on - strandat 733.213 kb on - strandat 733.347 kb on - strandat 733.347 kb on - strandat 733.347 kb on - strandat 733.424 kb on + strandat 733.424 kb on + strandat 733.424 kb on + strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.619 kb on + strand, within ABIE40_RS22935at 733.619 kb on + strand, within ABIE40_RS22935at 733.619 kb on + strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.622 kb on - strand, within ABIE40_RS22935at 733.682 kb on + strand, within ABIE40_RS22935at 733.683 kb on - strand, within ABIE40_RS22935at 733.688 kb on + strand, within ABIE40_RS22935

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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730,537 + ABIE40_RS22920 0.30 -2.1
730,537 + ABIE40_RS22920 0.30 +1.1
730,538 - ABIE40_RS22920 0.30 -0.9
730,538 - ABIE40_RS22920 0.30 +0.4
730,538 - ABIE40_RS22920 0.30 -0.5
730,570 + ABIE40_RS22920 0.32 +0.1
730,588 + ABIE40_RS22920 0.34 -1.2
730,588 + ABIE40_RS22920 0.34 +0.7
730,588 + ABIE40_RS22920 0.34 +0.6
730,588 + ABIE40_RS22920 0.34 -0.4
730,588 + ABIE40_RS22920 0.34 -0.3
730,589 - ABIE40_RS22920 0.34 -0.4
730,589 - ABIE40_RS22920 0.34 -0.3
730,590 + ABIE40_RS22920 0.34 -1.5
730,590 + ABIE40_RS22920 0.34 -2.9
730,590 + ABIE40_RS22920 0.34 -0.7
730,591 - ABIE40_RS22920 0.34 +0.8
730,591 - ABIE40_RS22920 0.34 -0.2
730,663 + ABIE40_RS22920 0.39 +0.9
730,663 + ABIE40_RS22920 0.39 +0.6
730,664 - ABIE40_RS22920 0.39 -0.5
730,664 - ABIE40_RS22920 0.39 +2.3
730,867 + ABIE40_RS22920 0.54 +1.1
730,867 + ABIE40_RS22920 0.54 +1.1
730,867 + ABIE40_RS22920 0.54 +0.4
730,867 + ABIE40_RS22920 0.54 -0.1
730,867 + ABIE40_RS22920 0.54 -1.1
730,868 - ABIE40_RS22920 0.55 +1.4
730,868 - ABIE40_RS22920 0.55 +0.8
730,868 - ABIE40_RS22920 0.55 +0.1
730,927 + ABIE40_RS22920 0.59 +1.0
730,927 + ABIE40_RS22920 0.59 -2.2
730,981 + ABIE40_RS22920 0.63 +0.9
730,981 + ABIE40_RS22920 0.63 +0.2
730,982 - ABIE40_RS22920 0.63 -0.7
730,982 - ABIE40_RS22920 0.63 +0.5
731,005 - ABIE40_RS22920 0.65 -0.8
731,027 - ABIE40_RS22920 0.66 +1.1
731,066 - ABIE40_RS22920 0.69 -1.1
731,066 - ABIE40_RS22920 0.69 +1.8
731,072 + ABIE40_RS22920 0.70 -0.5
731,232 + ABIE40_RS22920 0.81 -0.4
731,507 - +2.1
731,507 - -1.1
731,507 - +0.7
731,507 - +0.1
731,507 - +0.4
731,670 + ABIE40_RS22925 0.14 +1.6
731,671 - ABIE40_RS22925 0.14 +0.1
731,671 - ABIE40_RS22925 0.14 +1.4
731,878 - ABIE40_RS22925 0.32 -1.2
731,878 - ABIE40_RS22925 0.32 -0.3
732,309 + ABIE40_RS22925 0.68 -1.3
732,309 + ABIE40_RS22925 0.68 -2.0
732,310 - ABIE40_RS22925 0.68 +1.3
732,310 - ABIE40_RS22925 0.68 +0.3
732,311 + ABIE40_RS22925 0.68 +1.0
732,311 + ABIE40_RS22925 0.68 +0.2
732,564 + ABIE40_RS22925 0.89 -2.3
732,564 + ABIE40_RS22925 0.89 +0.1
732,565 - ABIE40_RS22925 0.89 +0.6
732,634 + +0.5
732,634 + +0.6
732,635 - +0.9
732,635 - +1.0
732,635 - +1.1
732,651 + -1.7
732,652 - -0.7
732,691 + +0.9
732,714 + +2.5
732,714 + -1.6
732,714 + -1.1
732,715 - -1.4
732,715 - +1.0
732,715 - +0.1
732,725 - -0.4
732,781 + ABIE40_RS22930 0.14 +0.7
732,781 + ABIE40_RS22930 0.14 +2.3
732,782 - ABIE40_RS22930 0.14 +2.7
732,782 - ABIE40_RS22930 0.14 -1.6
732,782 - ABIE40_RS22930 0.14 -0.5
732,782 - ABIE40_RS22930 0.14 -0.8
732,802 + ABIE40_RS22930 0.18 +1.7
732,803 - ABIE40_RS22930 0.18 +1.3
732,803 - ABIE40_RS22930 0.18 -0.6
732,931 + ABIE40_RS22930 0.41 +0.3
732,931 + ABIE40_RS22930 0.41 +1.3
733,046 - ABIE40_RS22930 0.62 +0.5
733,057 + ABIE40_RS22930 0.64 -2.5
733,057 + ABIE40_RS22930 0.64 +0.1
733,057 + ABIE40_RS22930 0.64 -0.7
733,057 + ABIE40_RS22930 0.64 -0.3
733,099 + ABIE40_RS22930 0.72 +0.8
733,100 - ABIE40_RS22930 0.72 +0.5
733,100 - ABIE40_RS22930 0.72 +0.4
733,115 - ABIE40_RS22930 0.75 +0.3
733,153 + ABIE40_RS22930 0.82 +1.9
733,154 - ABIE40_RS22930 0.82 +3.7
733,194 + ABIE40_RS22930 0.89 +1.8
733,212 + +3.3
733,213 - +2.0
733,213 - -0.6
733,213 - -1.5
733,347 - +1.1
733,347 - +0.4
733,347 - +0.0
733,424 + +0.2
733,424 + +0.6
733,424 + +0.4
733,425 - +0.6
733,425 - -2.1
733,425 - +0.2
733,425 - +0.6
733,425 - -0.0
733,425 - -1.1
733,619 + ABIE40_RS22935 0.20 -0.6
733,619 + ABIE40_RS22935 0.20 +0.0
733,619 + ABIE40_RS22935 0.20 -2.1
733,620 - ABIE40_RS22935 0.20 -1.1
733,620 - ABIE40_RS22935 0.20 +0.9
733,620 - ABIE40_RS22935 0.20 +0.1
733,620 - ABIE40_RS22935 0.20 +0.1
733,620 - ABIE40_RS22935 0.20 +0.2
733,621 + ABIE40_RS22935 0.20 -0.9
733,621 + ABIE40_RS22935 0.20 +1.1
733,621 + ABIE40_RS22935 0.20 -0.5
733,621 + ABIE40_RS22935 0.20 -0.4
733,621 + ABIE40_RS22935 0.20 +0.2
733,621 + ABIE40_RS22935 0.20 -0.2
733,621 + ABIE40_RS22935 0.20 +0.1
733,621 + ABIE40_RS22935 0.20 +0.3
733,622 - ABIE40_RS22935 0.20 -0.9
733,682 + ABIE40_RS22935 0.23 -1.8
733,683 - ABIE40_RS22935 0.23 +5.1
733,688 + ABIE40_RS22935 0.23 -0.5

Or see this region's nucleotide sequence