Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20100

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20090 and ABIE40_RS20095 are separated by 15 nucleotidesABIE40_RS20095 and ABIE40_RS20100 overlap by 4 nucleotidesABIE40_RS20100 and ABIE40_RS20105 are separated by 81 nucleotidesABIE40_RS20105 and ABIE40_RS20110 are separated by 63 nucleotides ABIE40_RS20090: ABIE40_RS20090 - LacI family DNA-binding transcriptional regulator, at 117,724 to 118,767 _RS20090 ABIE40_RS20095: ABIE40_RS20095 - inositol monophosphatase, at 118,783 to 119,604 _RS20095 ABIE40_RS20100: ABIE40_RS20100 - phosphodiesterase, at 119,601 to 120,356 _RS20100 ABIE40_RS20105: ABIE40_RS20105 - LacI family DNA-binding transcriptional regulator, at 120,438 to 121,199 _RS20105 ABIE40_RS20110: ABIE40_RS20110 - IS3 family transposase, at 121,263 to 122,452 _RS20110 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.618 kb on + strand, within ABIE40_RS20090at 118.619 kb on - strand, within ABIE40_RS20090at 118.778 kb on + strandat 118.779 kb on - strandat 119.241 kb on + strand, within ABIE40_RS20095at 119.401 kb on + strand, within ABIE40_RS20095at 119.401 kb on + strand, within ABIE40_RS20095at 119.404 kb on + strand, within ABIE40_RS20095at 119.404 kb on + strand, within ABIE40_RS20095at 119.404 kb on + strand, within ABIE40_RS20095at 119.404 kb on + strand, within ABIE40_RS20095at 119.405 kb on - strand, within ABIE40_RS20095at 119.405 kb on - strand, within ABIE40_RS20095at 119.405 kb on - strand, within ABIE40_RS20095at 119.415 kb on + strand, within ABIE40_RS20095at 119.415 kb on + strand, within ABIE40_RS20095at 119.415 kb on + strand, within ABIE40_RS20095at 119.415 kb on + strand, within ABIE40_RS20095at 119.415 kb on + strand, within ABIE40_RS20095at 119.415 kb on + strand, within ABIE40_RS20095at 119.416 kb on - strand, within ABIE40_RS20095at 119.416 kb on - strand, within ABIE40_RS20095at 119.416 kb on - strand, within ABIE40_RS20095at 119.556 kb on - strandat 119.611 kb on + strandat 119.611 kb on + strandat 119.611 kb on + strandat 119.611 kb on + strandat 119.611 kb on + strandat 119.611 kb on + strandat 119.612 kb on - strandat 119.612 kb on - strandat 119.612 kb on - strandat 119.612 kb on - strandat 119.612 kb on - strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.615 kb on + strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.616 kb on - strandat 119.771 kb on + strand, within ABIE40_RS20100at 119.771 kb on + strand, within ABIE40_RS20100at 119.771 kb on + strand, within ABIE40_RS20100at 119.771 kb on + strand, within ABIE40_RS20100at 119.772 kb on - strand, within ABIE40_RS20100at 119.784 kb on - strand, within ABIE40_RS20100at 119.784 kb on - strand, within ABIE40_RS20100at 119.915 kb on + strand, within ABIE40_RS20100at 120.039 kb on + strand, within ABIE40_RS20100at 120.039 kb on + strand, within ABIE40_RS20100at 120.040 kb on - strand, within ABIE40_RS20100at 120.076 kb on + strand, within ABIE40_RS20100at 120.155 kb on + strand, within ABIE40_RS20100at 120.155 kb on + strand, within ABIE40_RS20100at 120.155 kb on + strand, within ABIE40_RS20100at 120.155 kb on + strand, within ABIE40_RS20100at 120.156 kb on - strand, within ABIE40_RS20100at 120.156 kb on - strand, within ABIE40_RS20100at 120.294 kb on + strandat 120.295 kb on - strandat 120.295 kb on - strandat 120.473 kb on + strandat 120.771 kb on + strand, within ABIE40_RS20105at 120.912 kb on + strand, within ABIE40_RS20105at 120.913 kb on - strand, within ABIE40_RS20105at 120.913 kb on - strand, within ABIE40_RS20105at 121.029 kb on + strand, within ABIE40_RS20105at 121.029 kb on + strand, within ABIE40_RS20105at 121.030 kb on - strand, within ABIE40_RS20105at 121.031 kb on + strand, within ABIE40_RS20105at 121.031 kb on + strand, within ABIE40_RS20105at 121.032 kb on - strand, within ABIE40_RS20105at 121.080 kb on + strand, within ABIE40_RS20105at 121.080 kb on + strand, within ABIE40_RS20105at 121.080 kb on + strand, within ABIE40_RS20105at 121.080 kb on + strand, within ABIE40_RS20105at 121.080 kb on + strand, within ABIE40_RS20105at 121.080 kb on + strand, within ABIE40_RS20105at 121.081 kb on - strand, within ABIE40_RS20105at 121.081 kb on - strand, within ABIE40_RS20105at 121.081 kb on - strand, within ABIE40_RS20105at 121.128 kb on + strandat 121.189 kb on - strandat 121.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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118,618 + ABIE40_RS20090 0.86 +0.8
118,619 - ABIE40_RS20090 0.86 -0.9
118,778 + -0.2
118,779 - -1.2
119,241 + ABIE40_RS20095 0.56 -1.0
119,401 + ABIE40_RS20095 0.75 -0.0
119,401 + ABIE40_RS20095 0.75 -0.5
119,404 + ABIE40_RS20095 0.76 +1.5
119,404 + ABIE40_RS20095 0.76 +1.4
119,404 + ABIE40_RS20095 0.76 +0.2
119,404 + ABIE40_RS20095 0.76 +0.5
119,405 - ABIE40_RS20095 0.76 -0.6
119,405 - ABIE40_RS20095 0.76 -0.6
119,405 - ABIE40_RS20095 0.76 -0.3
119,415 + ABIE40_RS20095 0.77 -0.4
119,415 + ABIE40_RS20095 0.77 +0.9
119,415 + ABIE40_RS20095 0.77 -0.1
119,415 + ABIE40_RS20095 0.77 +0.2
119,415 + ABIE40_RS20095 0.77 +0.6
119,415 + ABIE40_RS20095 0.77 +0.1
119,416 - ABIE40_RS20095 0.77 -1.2
119,416 - ABIE40_RS20095 0.77 +0.0
119,416 - ABIE40_RS20095 0.77 +0.4
119,556 - -0.4
119,611 + -0.7
119,611 + +1.0
119,611 + -2.4
119,611 + +0.7
119,611 + +0.1
119,611 + +0.9
119,612 - +0.4
119,612 - -0.2
119,612 - +0.2
119,612 - +0.6
119,612 - +1.4
119,615 + -0.9
119,615 + +0.1
119,615 + +0.2
119,615 + +0.2
119,615 + +0.4
119,615 + +1.0
119,615 + +1.3
119,615 + -0.3
119,615 + +1.4
119,616 - +0.9
119,616 - -1.0
119,616 - -1.2
119,616 - +0.5
119,616 - -1.9
119,616 - +0.4
119,616 - +0.7
119,616 - +0.2
119,771 + ABIE40_RS20100 0.22 +1.0
119,771 + ABIE40_RS20100 0.22 +0.6
119,771 + ABIE40_RS20100 0.22 -1.8
119,771 + ABIE40_RS20100 0.22 -1.4
119,772 - ABIE40_RS20100 0.23 +0.7
119,784 - ABIE40_RS20100 0.24 -0.1
119,784 - ABIE40_RS20100 0.24 -0.5
119,915 + ABIE40_RS20100 0.42 +0.9
120,039 + ABIE40_RS20100 0.58 -0.5
120,039 + ABIE40_RS20100 0.58 -0.3
120,040 - ABIE40_RS20100 0.58 -0.7
120,076 + ABIE40_RS20100 0.63 -0.9
120,155 + ABIE40_RS20100 0.73 -0.6
120,155 + ABIE40_RS20100 0.73 +0.5
120,155 + ABIE40_RS20100 0.73 -2.1
120,155 + ABIE40_RS20100 0.73 -0.5
120,156 - ABIE40_RS20100 0.73 -1.2
120,156 - ABIE40_RS20100 0.73 +0.3
120,294 + -0.3
120,295 - +0.4
120,295 - -1.5
120,473 + -0.1
120,771 + ABIE40_RS20105 0.44 +0.4
120,912 + ABIE40_RS20105 0.62 -0.2
120,913 - ABIE40_RS20105 0.62 -0.1
120,913 - ABIE40_RS20105 0.62 +2.6
121,029 + ABIE40_RS20105 0.78 -2.0
121,029 + ABIE40_RS20105 0.78 +0.5
121,030 - ABIE40_RS20105 0.78 -1.1
121,031 + ABIE40_RS20105 0.78 +0.4
121,031 + ABIE40_RS20105 0.78 +0.6
121,032 - ABIE40_RS20105 0.78 -0.5
121,080 + ABIE40_RS20105 0.84 +0.6
121,080 + ABIE40_RS20105 0.84 +0.3
121,080 + ABIE40_RS20105 0.84 -1.2
121,080 + ABIE40_RS20105 0.84 -1.1
121,080 + ABIE40_RS20105 0.84 +0.7
121,080 + ABIE40_RS20105 0.84 -0.6
121,081 - ABIE40_RS20105 0.84 +1.9
121,081 - ABIE40_RS20105 0.84 -0.1
121,081 - ABIE40_RS20105 0.84 +0.7
121,128 + -0.1
121,189 - +1.1
121,189 - +0.9

Or see this region's nucleotide sequence