Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS08105 and ABIE40_RS08110 are separated by 116 nucleotides ABIE40_RS08110 and ABIE40_RS08115 are separated by 19 nucleotides ABIE40_RS08115 and ABIE40_RS08120 are separated by 107 nucleotides ABIE40_RS08120 and ABIE40_RS08125 are separated by 113 nucleotides
ABIE40_RS08105: ABIE40_RS08105 - oxidoreductase, at 1,562,422 to 1,563,267
_RS08105
ABIE40_RS08110: ABIE40_RS08110 - alpha/beta hydrolase, at 1,563,384 to 1,564,379
_RS08110
ABIE40_RS08115: ABIE40_RS08115 - hypothetical protein, at 1,564,399 to 1,564,590
_RS08115
ABIE40_RS08120: ABIE40_RS08120 - DUF1508 domain-containing protein, at 1,564,698 to 1,564,877
_RS08120
ABIE40_RS08125: ABIE40_RS08125 - carboxymuconolactone decarboxylase family protein, at 1,564,991 to 1,565,584
_RS08125
Position (kb) 1563
1564
1565 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1562.418 kb on + strand at 1562.418 kb on + strand at 1562.419 kb on - strand at 1562.799 kb on + strand, within ABIE40_RS08105 at 1562.870 kb on - strand, within ABIE40_RS08105 at 1562.872 kb on + strand, within ABIE40_RS08105 at 1562.872 kb on + strand, within ABIE40_RS08105 at 1562.872 kb on + strand, within ABIE40_RS08105 at 1562.873 kb on - strand, within ABIE40_RS08105 at 1562.873 kb on - strand, within ABIE40_RS08105 at 1562.949 kb on + strand, within ABIE40_RS08105 at 1562.949 kb on + strand, within ABIE40_RS08105 at 1562.949 kb on + strand, within ABIE40_RS08105 at 1562.949 kb on + strand, within ABIE40_RS08105 at 1562.950 kb on - strand, within ABIE40_RS08105 at 1562.950 kb on - strand, within ABIE40_RS08105 at 1563.029 kb on - strand, within ABIE40_RS08105 at 1563.029 kb on - strand, within ABIE40_RS08105 at 1563.029 kb on - strand, within ABIE40_RS08105 at 1563.070 kb on + strand, within ABIE40_RS08105 at 1563.070 kb on + strand, within ABIE40_RS08105 at 1563.070 kb on + strand, within ABIE40_RS08105 at 1563.072 kb on + strand, within ABIE40_RS08105 at 1563.073 kb on - strand, within ABIE40_RS08105 at 1563.073 kb on - strand, within ABIE40_RS08105 at 1563.073 kb on - strand, within ABIE40_RS08105 at 1563.073 kb on - strand, within ABIE40_RS08105 at 1563.175 kb on + strand, within ABIE40_RS08105 at 1563.175 kb on + strand, within ABIE40_RS08105 at 1563.234 kb on + strand at 1563.367 kb on + strand at 1563.367 kb on + strand at 1563.367 kb on + strand at 1563.367 kb on + strand at 1563.368 kb on - strand at 1563.368 kb on - strand at 1563.368 kb on - strand at 1563.368 kb on - strand at 1563.448 kb on - strand at 1563.608 kb on + strand, within ABIE40_RS08110 at 1563.608 kb on + strand, within ABIE40_RS08110 at 1563.608 kb on + strand, within ABIE40_RS08110 at 1563.609 kb on - strand, within ABIE40_RS08110 at 1563.687 kb on + strand, within ABIE40_RS08110 at 1563.687 kb on + strand, within ABIE40_RS08110 at 1563.687 kb on + strand, within ABIE40_RS08110 at 1563.688 kb on - strand, within ABIE40_RS08110 at 1563.688 kb on - strand, within ABIE40_RS08110 at 1563.688 kb on - strand, within ABIE40_RS08110 at 1563.688 kb on - strand, within ABIE40_RS08110 at 1563.688 kb on - strand, within ABIE40_RS08110 at 1563.884 kb on + strand, within ABIE40_RS08110 at 1563.885 kb on - strand, within ABIE40_RS08110 at 1564.090 kb on - strand, within ABIE40_RS08110 at 1564.414 kb on + strand at 1564.414 kb on + strand at 1564.414 kb on + strand at 1564.414 kb on + strand at 1564.415 kb on - strand at 1564.415 kb on - strand at 1564.415 kb on - strand at 1564.415 kb on - strand at 1564.415 kb on - strand at 1564.415 kb on - strand at 1564.427 kb on + strand, within ABIE40_RS08115 at 1564.475 kb on - strand, within ABIE40_RS08115 at 1564.475 kb on - strand, within ABIE40_RS08115 at 1564.525 kb on + strand, within ABIE40_RS08115 at 1564.526 kb on - strand, within ABIE40_RS08115 at 1564.526 kb on - strand, within ABIE40_RS08115 at 1564.670 kb on + strand at 1564.670 kb on + strand at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.834 kb on + strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.835 kb on - strand, within ABIE40_RS08120 at 1564.838 kb on + strand, within ABIE40_RS08120 at 1564.838 kb on + strand, within ABIE40_RS08120 at 1564.839 kb on - strand, within ABIE40_RS08120 at 1564.915 kb on + strand at 1564.916 kb on - strand at 1564.916 kb on - strand at 1564.916 kb on - strand at 1564.916 kb on - strand at 1564.916 kb on - strand at 1565.036 kb on + strand at 1565.036 kb on + strand at 1565.061 kb on + strand, within ABIE40_RS08125 at 1565.061 kb on + strand, within ABIE40_RS08125 at 1565.062 kb on - strand, within ABIE40_RS08125 at 1565.062 kb on - strand, within ABIE40_RS08125 at 1565.201 kb on - strand, within ABIE40_RS08125 at 1565.311 kb on + strand, within ABIE40_RS08125 at 1565.355 kb on + strand, within ABIE40_RS08125 at 1565.355 kb on + strand, within ABIE40_RS08125 at 1565.355 kb on + strand, within ABIE40_RS08125 at 1565.356 kb on - strand, within ABIE40_RS08125 at 1565.356 kb on - strand, within ABIE40_RS08125 at 1565.356 kb on - strand, within ABIE40_RS08125
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,562,418 + -0.9 1,562,418 + +0.7 1,562,419 - +3.0 1,562,799 + ABIE40_RS08105 0.45 +1.8 1,562,870 - ABIE40_RS08105 0.53 +0.2 1,562,872 + ABIE40_RS08105 0.53 +0.1 1,562,872 + ABIE40_RS08105 0.53 +1.2 1,562,872 + ABIE40_RS08105 0.53 -0.9 1,562,873 - ABIE40_RS08105 0.53 +0.8 1,562,873 - ABIE40_RS08105 0.53 -0.8 1,562,949 + ABIE40_RS08105 0.62 +0.4 1,562,949 + ABIE40_RS08105 0.62 -0.7 1,562,949 + ABIE40_RS08105 0.62 -0.7 1,562,949 + ABIE40_RS08105 0.62 +0.9 1,562,950 - ABIE40_RS08105 0.62 -0.4 1,562,950 - ABIE40_RS08105 0.62 +0.7 1,563,029 - ABIE40_RS08105 0.72 +1.0 1,563,029 - ABIE40_RS08105 0.72 -0.7 1,563,029 - ABIE40_RS08105 0.72 -0.4 1,563,070 + ABIE40_RS08105 0.77 +0.8 1,563,070 + ABIE40_RS08105 0.77 -1.0 1,563,070 + ABIE40_RS08105 0.77 -1.6 1,563,072 + ABIE40_RS08105 0.77 +0.4 1,563,073 - ABIE40_RS08105 0.77 -0.1 1,563,073 - ABIE40_RS08105 0.77 +0.6 1,563,073 - ABIE40_RS08105 0.77 +4.3 1,563,073 - ABIE40_RS08105 0.77 -0.0 1,563,175 + ABIE40_RS08105 0.89 -0.8 1,563,175 + ABIE40_RS08105 0.89 -0.7 1,563,234 + +0.2 1,563,367 + -0.5 1,563,367 + -1.3 1,563,367 + -0.8 1,563,367 + -0.7 1,563,368 - +0.2 1,563,368 - -1.4 1,563,368 - +0.7 1,563,368 - -1.5 1,563,448 - +0.0 1,563,608 + ABIE40_RS08110 0.22 -0.3 1,563,608 + ABIE40_RS08110 0.22 +0.6 1,563,608 + ABIE40_RS08110 0.22 +0.9 1,563,609 - ABIE40_RS08110 0.23 +1.2 1,563,687 + ABIE40_RS08110 0.30 -0.1 1,563,687 + ABIE40_RS08110 0.30 +0.6 1,563,687 + ABIE40_RS08110 0.30 -0.0 1,563,688 - ABIE40_RS08110 0.31 -0.7 1,563,688 - ABIE40_RS08110 0.31 +0.0 1,563,688 - ABIE40_RS08110 0.31 +0.1 1,563,688 - ABIE40_RS08110 0.31 -0.2 1,563,688 - ABIE40_RS08110 0.31 -0.1 1,563,884 + ABIE40_RS08110 0.50 +0.4 1,563,885 - ABIE40_RS08110 0.50 +2.3 1,564,090 - ABIE40_RS08110 0.71 +0.4 1,564,414 + -0.4 1,564,414 + +0.7 1,564,414 + +1.0 1,564,414 + +2.6 1,564,415 - +1.6 1,564,415 - -1.3 1,564,415 - -1.2 1,564,415 - +1.3 1,564,415 - -0.3 1,564,415 - +0.0 1,564,427 + ABIE40_RS08115 0.15 -0.4 1,564,475 - ABIE40_RS08115 0.40 +0.8 1,564,475 - ABIE40_RS08115 0.40 +1.6 1,564,525 + ABIE40_RS08115 0.66 +0.5 1,564,526 - ABIE40_RS08115 0.66 -0.2 1,564,526 - ABIE40_RS08115 0.66 +2.6 1,564,670 + -0.3 1,564,670 + +0.7 1,564,834 + ABIE40_RS08120 0.76 +2.4 1,564,834 + ABIE40_RS08120 0.76 +0.1 1,564,834 + ABIE40_RS08120 0.76 -2.3 1,564,834 + ABIE40_RS08120 0.76 +4.0 1,564,834 + ABIE40_RS08120 0.76 -0.0 1,564,834 + ABIE40_RS08120 0.76 +0.9 1,564,834 + ABIE40_RS08120 0.76 -0.3 1,564,835 - ABIE40_RS08120 0.76 +0.7 1,564,835 - ABIE40_RS08120 0.76 +0.8 1,564,835 - ABIE40_RS08120 0.76 +1.9 1,564,835 - ABIE40_RS08120 0.76 +0.4 1,564,835 - ABIE40_RS08120 0.76 -0.6 1,564,835 - ABIE40_RS08120 0.76 -1.6 1,564,835 - ABIE40_RS08120 0.76 +0.8 1,564,838 + ABIE40_RS08120 0.78 +3.0 1,564,838 + ABIE40_RS08120 0.78 +0.0 1,564,839 - ABIE40_RS08120 0.78 +0.9 1,564,915 + -1.6 1,564,916 - -0.7 1,564,916 - +0.1 1,564,916 - +0.4 1,564,916 - +1.0 1,564,916 - -2.0 1,565,036 + -0.1 1,565,036 + -1.9 1,565,061 + ABIE40_RS08125 0.12 +2.6 1,565,061 + ABIE40_RS08125 0.12 -1.3 1,565,062 - ABIE40_RS08125 0.12 +0.5 1,565,062 - ABIE40_RS08125 0.12 +1.3 1,565,201 - ABIE40_RS08125 0.35 -1.1 1,565,311 + ABIE40_RS08125 0.54 -0.2 1,565,355 + ABIE40_RS08125 0.61 +0.3 1,565,355 + ABIE40_RS08125 0.61 -0.8 1,565,355 + ABIE40_RS08125 0.61 +0.2 1,565,356 - ABIE40_RS08125 0.61 -0.8 1,565,356 - ABIE40_RS08125 0.61 -0.3 1,565,356 - ABIE40_RS08125 0.61 +0.3
Or see this region's nucleotide sequence