Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04340 and ABIE40_RS04345 overlap by 4 nucleotides ABIE40_RS04345 and ABIE40_RS04350 overlap by 4 nucleotides ABIE40_RS04350 and ABIE40_RS04355 are separated by 3 nucleotides ABIE40_RS04355 and ABIE40_RS04360 are separated by 163 nucleotides ABIE40_RS04360 and ABIE40_RS04365 are separated by 361 nucleotides
ABIE40_RS04340: ABIE40_RS04340 - SDR family oxidoreductase, at 857,901 to 859,586
_RS04340
ABIE40_RS04345: ABIE40_RS04345 - DCC1-like thiol-disulfide oxidoreductase family protein, at 859,583 to 860,041
_RS04345
ABIE40_RS04350: ABIE40_RS04350 - MBL fold metallo-hydrolase, at 860,038 to 860,952
_RS04350
ABIE40_RS04355: ABIE40_RS04355 - cupin domain-containing protein, at 860,956 to 861,252
_RS04355
ABIE40_RS04360: ABIE40_RS04360 - tRNA-Gln, at 861,416 to 861,490
_RS04360
ABIE40_RS04365: ABIE40_RS04365 - helix-turn-helix domain-containing protein, at 861,852 to 862,469
_RS04365
Position (kb) 860
861 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.040 kb on - strand, within ABIE40_RS04340 at 859.125 kb on - strand, within ABIE40_RS04340 at 859.175 kb on + strand, within ABIE40_RS04340 at 859.175 kb on + strand, within ABIE40_RS04340 at 859.175 kb on + strand, within ABIE40_RS04340 at 859.176 kb on - strand, within ABIE40_RS04340 at 859.176 kb on - strand, within ABIE40_RS04340 at 859.274 kb on - strand, within ABIE40_RS04340 at 859.274 kb on - strand, within ABIE40_RS04340 at 859.556 kb on + strand at 859.677 kb on + strand, within ABIE40_RS04345 at 859.678 kb on - strand, within ABIE40_RS04345 at 859.678 kb on - strand, within ABIE40_RS04345 at 859.839 kb on + strand, within ABIE40_RS04345 at 859.839 kb on + strand, within ABIE40_RS04345 at 859.840 kb on - strand, within ABIE40_RS04345 at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.020 kb on - strand at 860.020 kb on - strand at 860.020 kb on - strand at 860.020 kb on - strand at 860.054 kb on + strand at 860.118 kb on + strand at 860.119 kb on - strand at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.247 kb on + strand, within ABIE40_RS04350 at 860.247 kb on + strand, within ABIE40_RS04350 at 860.248 kb on - strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.363 kb on + strand, within ABIE40_RS04350 at 860.363 kb on + strand, within ABIE40_RS04350 at 860.363 kb on + strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.415 kb on + strand, within ABIE40_RS04350 at 860.446 kb on - strand, within ABIE40_RS04350 at 860.703 kb on + strand, within ABIE40_RS04350 at 860.703 kb on + strand, within ABIE40_RS04350 at 860.703 kb on + strand, within ABIE40_RS04350 at 860.703 kb on + strand, within ABIE40_RS04350 at 860.718 kb on + strand, within ABIE40_RS04350 at 860.805 kb on + strand, within ABIE40_RS04350 at 860.823 kb on + strand, within ABIE40_RS04350 at 860.823 kb on + strand, within ABIE40_RS04350 at 860.824 kb on - strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.825 kb on + strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.826 kb on - strand, within ABIE40_RS04350 at 860.913 kb on - strand at 860.913 kb on - strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.957 kb on + strand at 860.958 kb on - strand at 860.958 kb on - strand at 860.958 kb on - strand at 860.958 kb on - strand at 860.958 kb on - strand at 860.964 kb on - strand at 861.012 kb on + strand, within ABIE40_RS04355 at 861.012 kb on + strand, within ABIE40_RS04355 at 861.012 kb on + strand, within ABIE40_RS04355 at 861.012 kb on + strand, within ABIE40_RS04355 at 861.012 kb on + strand, within ABIE40_RS04355 at 861.013 kb on - strand, within ABIE40_RS04355 at 861.013 kb on - strand, within ABIE40_RS04355 at 861.125 kb on + strand, within ABIE40_RS04355 at 861.125 kb on + strand, within ABIE40_RS04355 at 861.125 kb on + strand, within ABIE40_RS04355 at 861.125 kb on + strand, within ABIE40_RS04355 at 861.126 kb on - strand, within ABIE40_RS04355 at 861.126 kb on - strand, within ABIE40_RS04355 at 861.126 kb on - strand, within ABIE40_RS04355 at 861.126 kb on - strand, within ABIE40_RS04355 at 861.126 kb on - strand, within ABIE40_RS04355 at 861.131 kb on + strand, within ABIE40_RS04355 at 861.132 kb on - strand, within ABIE40_RS04355 at 861.274 kb on + strand at 861.274 kb on + strand at 861.274 kb on + strand at 861.274 kb on + strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.275 kb on - strand at 861.276 kb on + strand at 861.292 kb on - strand at 861.292 kb on - strand at 861.321 kb on + strand at 861.321 kb on + strand at 861.321 kb on + strand at 861.321 kb on + strand at 861.598 kb on + strand at 861.598 kb on + strand at 861.599 kb on - strand at 861.599 kb on - strand at 861.651 kb on + strand at 861.651 kb on + strand at 861.651 kb on + strand at 861.652 kb on - strand at 861.652 kb on - strand at 861.652 kb on - strand at 861.652 kb on - strand at 861.675 kb on - strand at 861.675 kb on - strand at 861.675 kb on - strand at 861.675 kb on - strand at 861.675 kb on - strand at 861.675 kb on - strand at 861.681 kb on + strand at 861.682 kb on - strand at 861.687 kb on + strand at 861.687 kb on + strand at 861.688 kb on - strand at 861.688 kb on - strand at 861.692 kb on + strand at 861.692 kb on + strand at 861.692 kb on + strand at 861.693 kb on - strand at 861.693 kb on - strand at 861.699 kb on - strand at 861.699 kb on - strand at 861.711 kb on + strand at 861.723 kb on + strand at 861.738 kb on - strand at 861.738 kb on - strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.752 kb on - strand at 861.752 kb on - strand at 861.752 kb on - strand at 861.752 kb on - strand at 861.752 kb on - strand at 861.766 kb on + strand at 861.767 kb on - strand at 861.767 kb on - strand at 861.785 kb on - strand at 861.795 kb on + strand at 861.796 kb on - strand at 861.796 kb on - strand at 861.810 kb on + strand at 861.810 kb on + strand at 861.811 kb on - strand at 861.819 kb on + strand at 861.819 kb on + strand at 861.820 kb on - strand at 861.820 kb on - strand at 861.822 kb on + strand at 861.822 kb on + strand at 861.823 kb on - strand at 861.823 kb on - strand at 861.823 kb on - strand at 861.826 kb on + strand at 861.826 kb on + strand at 861.826 kb on + strand at 861.826 kb on + strand at 861.826 kb on + strand at 861.827 kb on - strand at 861.827 kb on - strand at 861.827 kb on - strand at 861.827 kb on - strand at 861.827 kb on - strand at 861.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 859,039 + ABIE40_RS04340 0.67 -0.8 859,039 + ABIE40_RS04340 0.67 +0.9 859,039 + ABIE40_RS04340 0.67 +0.0 859,039 + ABIE40_RS04340 0.67 +0.5 859,039 + ABIE40_RS04340 0.67 +0.1 859,040 - ABIE40_RS04340 0.68 +0.2 859,125 - ABIE40_RS04340 0.73 +0.3 859,175 + ABIE40_RS04340 0.76 +0.3 859,175 + ABIE40_RS04340 0.76 -0.5 859,175 + ABIE40_RS04340 0.76 -1.0 859,176 - ABIE40_RS04340 0.76 -0.4 859,176 - ABIE40_RS04340 0.76 -0.2 859,274 - ABIE40_RS04340 0.81 -0.5 859,274 - ABIE40_RS04340 0.81 +0.2 859,556 + -2.6 859,677 + ABIE40_RS04345 0.20 +0.3 859,678 - ABIE40_RS04345 0.21 -0.6 859,678 - ABIE40_RS04345 0.21 -0.2 859,839 + ABIE40_RS04345 0.56 +0.6 859,839 + ABIE40_RS04345 0.56 +0.3 859,840 - ABIE40_RS04345 0.56 -1.0 860,019 + +1.0 860,019 + +1.3 860,019 + -0.3 860,019 + -0.0 860,019 + +0.2 860,019 + -1.7 860,020 - -0.8 860,020 - -0.9 860,020 - -0.2 860,020 - +1.1 860,054 + -0.7 860,118 + -0.3 860,119 - -0.6 860,175 - ABIE40_RS04350 0.15 -0.6 860,175 - ABIE40_RS04350 0.15 -2.3 860,175 - ABIE40_RS04350 0.15 +1.6 860,175 - ABIE40_RS04350 0.15 -0.9 860,175 - ABIE40_RS04350 0.15 -2.7 860,247 + ABIE40_RS04350 0.23 -1.2 860,247 + ABIE40_RS04350 0.23 -2.4 860,248 - ABIE40_RS04350 0.23 -1.4 860,272 + ABIE40_RS04350 0.26 -2.6 860,272 + ABIE40_RS04350 0.26 -0.2 860,272 + ABIE40_RS04350 0.26 +0.3 860,272 + ABIE40_RS04350 0.26 -1.5 860,272 + ABIE40_RS04350 0.26 +0.0 860,272 + ABIE40_RS04350 0.26 +0.4 860,273 - ABIE40_RS04350 0.26 -1.5 860,273 - ABIE40_RS04350 0.26 -0.4 860,273 - ABIE40_RS04350 0.26 -0.4 860,273 - ABIE40_RS04350 0.26 -0.7 860,363 + ABIE40_RS04350 0.36 -4.0 860,363 + ABIE40_RS04350 0.36 -1.9 860,363 + ABIE40_RS04350 0.36 -1.6 860,364 - ABIE40_RS04350 0.36 -2.6 860,364 - ABIE40_RS04350 0.36 -0.6 860,364 - ABIE40_RS04350 0.36 +0.6 860,364 - ABIE40_RS04350 0.36 -1.2 860,364 - ABIE40_RS04350 0.36 +0.1 860,364 - ABIE40_RS04350 0.36 +1.6 860,364 - ABIE40_RS04350 0.36 -1.2 860,415 + ABIE40_RS04350 0.41 -0.4 860,446 - ABIE40_RS04350 0.45 -0.9 860,703 + ABIE40_RS04350 0.73 -2.0 860,703 + ABIE40_RS04350 0.73 -2.3 860,703 + ABIE40_RS04350 0.73 -1.4 860,703 + ABIE40_RS04350 0.73 -1.9 860,718 + ABIE40_RS04350 0.74 -2.6 860,805 + ABIE40_RS04350 0.84 -0.4 860,823 + ABIE40_RS04350 0.86 +0.2 860,823 + ABIE40_RS04350 0.86 -1.6 860,824 - ABIE40_RS04350 0.86 -0.8 860,825 + ABIE40_RS04350 0.86 -2.1 860,825 + ABIE40_RS04350 0.86 -1.9 860,825 + ABIE40_RS04350 0.86 +1.9 860,825 + ABIE40_RS04350 0.86 -0.4 860,825 + ABIE40_RS04350 0.86 +1.8 860,825 + ABIE40_RS04350 0.86 -1.6 860,825 + ABIE40_RS04350 0.86 -1.1 860,826 - ABIE40_RS04350 0.86 +0.9 860,826 - ABIE40_RS04350 0.86 +0.0 860,826 - ABIE40_RS04350 0.86 -2.6 860,826 - ABIE40_RS04350 0.86 -1.2 860,826 - ABIE40_RS04350 0.86 +0.1 860,826 - ABIE40_RS04350 0.86 -0.6 860,826 - ABIE40_RS04350 0.86 -0.4 860,826 - ABIE40_RS04350 0.86 -1.0 860,826 - ABIE40_RS04350 0.86 -0.5 860,826 - ABIE40_RS04350 0.86 +0.6 860,826 - ABIE40_RS04350 0.86 -0.3 860,826 - ABIE40_RS04350 0.86 -1.0 860,826 - ABIE40_RS04350 0.86 +1.1 860,913 - -0.1 860,913 - -2.5 860,957 + -1.0 860,957 + +0.4 860,957 + -1.1 860,957 + -1.0 860,957 + -0.7 860,957 + -0.5 860,957 + -1.0 860,957 + -1.2 860,957 + -0.1 860,957 + +0.1 860,957 + -0.4 860,957 + -1.9 860,957 + -1.6 860,957 + -1.9 860,958 - -0.6 860,958 - +0.6 860,958 - +0.5 860,958 - -0.8 860,958 - -1.7 860,964 - -0.2 861,012 + ABIE40_RS04355 0.19 -1.4 861,012 + ABIE40_RS04355 0.19 -1.5 861,012 + ABIE40_RS04355 0.19 -0.4 861,012 + ABIE40_RS04355 0.19 +0.6 861,012 + ABIE40_RS04355 0.19 -0.8 861,013 - ABIE40_RS04355 0.19 +2.9 861,013 - ABIE40_RS04355 0.19 +0.8 861,125 + ABIE40_RS04355 0.57 +0.2 861,125 + ABIE40_RS04355 0.57 -1.6 861,125 + ABIE40_RS04355 0.57 -1.3 861,125 + ABIE40_RS04355 0.57 -0.1 861,126 - ABIE40_RS04355 0.57 +1.0 861,126 - ABIE40_RS04355 0.57 -1.2 861,126 - ABIE40_RS04355 0.57 -0.5 861,126 - ABIE40_RS04355 0.57 +0.7 861,126 - ABIE40_RS04355 0.57 -1.2 861,131 + ABIE40_RS04355 0.59 -0.7 861,132 - ABIE40_RS04355 0.59 -0.1 861,274 + -1.2 861,274 + +0.1 861,274 + -0.6 861,274 + -0.7 861,275 - -0.1 861,275 - -0.1 861,275 - -0.9 861,275 - +0.0 861,275 - -0.9 861,275 - -0.2 861,275 - +0.1 861,275 - -1.1 861,275 - +0.0 861,275 - -0.6 861,275 - -1.0 861,276 + -0.3 861,292 - +0.2 861,292 - +0.4 861,321 + -0.1 861,321 + +0.1 861,321 + -0.7 861,321 + +0.8 861,598 + +0.7 861,598 + +0.0 861,599 - +1.2 861,599 - -0.4 861,651 + +0.2 861,651 + -0.2 861,651 + -1.5 861,652 - +1.0 861,652 - +0.8 861,652 - +0.5 861,652 - -0.6 861,675 - -0.5 861,675 - -1.6 861,675 - -0.7 861,675 - -0.4 861,675 - -0.4 861,675 - -1.1 861,681 + +1.2 861,682 - -0.1 861,687 + +0.3 861,687 + +0.9 861,688 - -2.2 861,688 - -2.3 861,692 + -0.1 861,692 + -0.5 861,692 + -0.2 861,693 - -0.2 861,693 - +0.9 861,699 - +0.4 861,699 - +1.6 861,711 + -0.5 861,723 + -0.4 861,738 - -0.7 861,738 - +0.6 861,751 + -1.8 861,751 + -0.4 861,751 + +0.2 861,752 - -1.7 861,752 - -0.9 861,752 - -0.0 861,752 - -0.6 861,752 - -3.3 861,766 + -0.0 861,767 - -0.2 861,767 - +0.6 861,785 - +1.1 861,795 + +0.3 861,796 - -0.8 861,796 - -0.9 861,810 + -0.0 861,810 + +1.2 861,811 - +2.5 861,819 + -1.1 861,819 + -0.3 861,820 - -1.0 861,820 - +1.8 861,822 + +0.0 861,822 + +0.5 861,823 - +0.9 861,823 - +0.5 861,823 - +0.9 861,826 + +0.6 861,826 + +0.7 861,826 + +0.1 861,826 + +1.0 861,826 + +0.6 861,827 - -0.4 861,827 - -0.3 861,827 - +0.5 861,827 - +1.0 861,827 - +0.9 861,854 - -0.9
Or see this region's nucleotide sequence