Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02235

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02230 and ABIE40_RS02235 are separated by 33 nucleotidesABIE40_RS02235 and ABIE40_RS02240 are separated by 228 nucleotides ABIE40_RS02230: ABIE40_RS02230 - aldo/keto reductase, at 440,113 to 441,132 _RS02230 ABIE40_RS02235: ABIE40_RS02235 - altronate dehydratase family protein, at 441,166 to 442,668 _RS02235 ABIE40_RS02240: ABIE40_RS02240 - GntR family transcriptional regulator, at 442,897 to 443,793 _RS02240 Position (kb) 441 442 443Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 440.178 kb on - strandat 440.379 kb on + strand, within ABIE40_RS02230at 440.379 kb on + strand, within ABIE40_RS02230at 440.379 kb on + strand, within ABIE40_RS02230at 440.379 kb on + strand, within ABIE40_RS02230at 440.379 kb on + strand, within ABIE40_RS02230at 440.379 kb on + strand, within ABIE40_RS02230at 440.380 kb on - strand, within ABIE40_RS02230at 440.380 kb on - strand, within ABIE40_RS02230at 440.381 kb on + strand, within ABIE40_RS02230at 440.381 kb on + strand, within ABIE40_RS02230at 440.382 kb on - strand, within ABIE40_RS02230at 440.382 kb on - strand, within ABIE40_RS02230at 440.382 kb on - strand, within ABIE40_RS02230at 440.382 kb on - strand, within ABIE40_RS02230at 440.382 kb on - strand, within ABIE40_RS02230at 440.421 kb on + strand, within ABIE40_RS02230at 440.422 kb on - strand, within ABIE40_RS02230at 440.672 kb on + strand, within ABIE40_RS02230at 440.672 kb on + strand, within ABIE40_RS02230at 440.672 kb on + strand, within ABIE40_RS02230at 440.672 kb on + strand, within ABIE40_RS02230at 440.673 kb on - strand, within ABIE40_RS02230at 440.700 kb on + strand, within ABIE40_RS02230at 440.700 kb on + strand, within ABIE40_RS02230at 440.700 kb on + strand, within ABIE40_RS02230at 440.701 kb on - strand, within ABIE40_RS02230at 440.701 kb on - strand, within ABIE40_RS02230at 440.701 kb on - strand, within ABIE40_RS02230at 440.701 kb on - strand, within ABIE40_RS02230at 440.713 kb on - strand, within ABIE40_RS02230at 440.723 kb on + strand, within ABIE40_RS02230at 440.723 kb on + strand, within ABIE40_RS02230at 440.723 kb on + strand, within ABIE40_RS02230at 440.723 kb on + strand, within ABIE40_RS02230at 440.723 kb on + strand, within ABIE40_RS02230at 440.724 kb on - strand, within ABIE40_RS02230at 440.724 kb on - strand, within ABIE40_RS02230at 440.759 kb on + strand, within ABIE40_RS02230at 440.759 kb on + strand, within ABIE40_RS02230at 440.760 kb on - strand, within ABIE40_RS02230at 440.792 kb on + strand, within ABIE40_RS02230at 440.793 kb on - strand, within ABIE40_RS02230at 440.793 kb on - strand, within ABIE40_RS02230at 440.793 kb on - strand, within ABIE40_RS02230at 440.798 kb on + strand, within ABIE40_RS02230at 440.798 kb on + strand, within ABIE40_RS02230at 440.798 kb on + strand, within ABIE40_RS02230at 440.799 kb on - strand, within ABIE40_RS02230at 440.799 kb on - strand, within ABIE40_RS02230at 440.804 kb on + strand, within ABIE40_RS02230at 440.804 kb on + strand, within ABIE40_RS02230at 440.805 kb on - strand, within ABIE40_RS02230at 440.805 kb on - strand, within ABIE40_RS02230at 440.805 kb on - strand, within ABIE40_RS02230at 440.834 kb on + strand, within ABIE40_RS02230at 440.834 kb on + strand, within ABIE40_RS02230at 440.834 kb on + strand, within ABIE40_RS02230at 440.834 kb on + strand, within ABIE40_RS02230at 440.834 kb on + strand, within ABIE40_RS02230at 440.834 kb on + strand, within ABIE40_RS02230at 440.835 kb on - strand, within ABIE40_RS02230at 440.835 kb on - strand, within ABIE40_RS02230at 440.835 kb on - strand, within ABIE40_RS02230at 440.835 kb on - strand, within ABIE40_RS02230at 440.838 kb on + strand, within ABIE40_RS02230at 440.840 kb on + strand, within ABIE40_RS02230at 440.840 kb on + strand, within ABIE40_RS02230at 440.840 kb on + strand, within ABIE40_RS02230at 440.840 kb on + strand, within ABIE40_RS02230at 440.841 kb on - strand, within ABIE40_RS02230at 440.841 kb on - strand, within ABIE40_RS02230at 440.841 kb on - strand, within ABIE40_RS02230at 440.903 kb on + strand, within ABIE40_RS02230at 440.903 kb on + strand, within ABIE40_RS02230at 440.903 kb on + strand, within ABIE40_RS02230at 440.903 kb on + strand, within ABIE40_RS02230at 440.904 kb on - strand, within ABIE40_RS02230at 440.904 kb on - strand, within ABIE40_RS02230at 440.942 kb on + strand, within ABIE40_RS02230at 440.942 kb on + strand, within ABIE40_RS02230at 440.942 kb on + strand, within ABIE40_RS02230at 440.943 kb on - strand, within ABIE40_RS02230at 441.162 kb on + strandat 441.162 kb on + strandat 441.163 kb on - strandat 441.163 kb on - strandat 441.163 kb on - strandat 441.163 kb on - strandat 441.163 kb on - strandat 441.164 kb on + strandat 441.164 kb on + strandat 441.164 kb on + strandat 441.164 kb on + strandat 441.165 kb on - strandat 441.165 kb on - strandat 441.165 kb on - strandat 441.167 kb on + strandat 441.167 kb on + strandat 441.167 kb on + strandat 441.167 kb on + strandat 441.167 kb on + strandat 441.167 kb on + strandat 441.168 kb on - strandat 441.212 kb on + strandat 441.356 kb on + strand, within ABIE40_RS02235at 441.357 kb on - strand, within ABIE40_RS02235at 441.444 kb on + strand, within ABIE40_RS02235at 441.536 kb on + strand, within ABIE40_RS02235at 441.536 kb on + strand, within ABIE40_RS02235at 441.539 kb on - strand, within ABIE40_RS02235at 441.542 kb on + strand, within ABIE40_RS02235at 441.543 kb on - strand, within ABIE40_RS02235at 441.543 kb on - strand, within ABIE40_RS02235at 441.543 kb on - strand, within ABIE40_RS02235at 441.543 kb on - strand, within ABIE40_RS02235at 441.604 kb on - strand, within ABIE40_RS02235at 441.674 kb on + strand, within ABIE40_RS02235at 441.674 kb on + strand, within ABIE40_RS02235at 441.674 kb on + strand, within ABIE40_RS02235at 441.674 kb on + strand, within ABIE40_RS02235at 441.675 kb on - strand, within ABIE40_RS02235at 441.675 kb on - strand, within ABIE40_RS02235at 441.675 kb on - strand, within ABIE40_RS02235at 441.675 kb on - strand, within ABIE40_RS02235at 441.675 kb on - strand, within ABIE40_RS02235at 441.675 kb on - strand, within ABIE40_RS02235at 441.761 kb on + strand, within ABIE40_RS02235at 441.762 kb on - strand, within ABIE40_RS02235at 441.762 kb on - strand, within ABIE40_RS02235at 442.047 kb on - strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.119 kb on - strand, within ABIE40_RS02235at 442.119 kb on - strand, within ABIE40_RS02235at 442.119 kb on - strand, within ABIE40_RS02235at 442.220 kb on + strand, within ABIE40_RS02235at 442.220 kb on + strand, within ABIE40_RS02235at 442.221 kb on - strand, within ABIE40_RS02235at 442.221 kb on - strand, within ABIE40_RS02235at 442.221 kb on - strand, within ABIE40_RS02235at 442.305 kb on + strand, within ABIE40_RS02235at 442.306 kb on - strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.343 kb on + strand, within ABIE40_RS02235at 442.343 kb on + strand, within ABIE40_RS02235at 442.344 kb on - strand, within ABIE40_RS02235at 442.344 kb on - strand, within ABIE40_RS02235at 442.344 kb on - strand, within ABIE40_RS02235at 442.500 kb on - strand, within ABIE40_RS02235at 442.629 kb on + strandat 442.630 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.739 kb on - strandat 442.762 kb on + strandat 442.762 kb on + strandat 442.763 kb on - strandat 442.810 kb on + strandat 442.813 kb on + strandat 442.814 kb on - strandat 442.815 kb on + strandat 442.815 kb on + strandat 442.815 kb on + strandat 442.816 kb on - strandat 442.816 kb on - strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.832 kb on - strandat 442.832 kb on - strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.912 kb on - strandat 442.912 kb on - strandat 442.930 kb on + strandat 442.930 kb on + strandat 442.930 kb on + strandat 442.930 kb on + strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.939 kb on + strandat 443.420 kb on - strand, within ABIE40_RS02240at 443.497 kb on + strand, within ABIE40_RS02240at 443.498 kb on - strand, within ABIE40_RS02240at 443.579 kb on - strand, within ABIE40_RS02240at 443.605 kb on + strand, within ABIE40_RS02240at 443.606 kb on - strand, within ABIE40_RS02240at 443.611 kb on + strand, within ABIE40_RS02240at 443.612 kb on - strand, within ABIE40_RS02240

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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440,178 - +0.5
440,379 + ABIE40_RS02230 0.26 +0.3
440,379 + ABIE40_RS02230 0.26 -1.5
440,379 + ABIE40_RS02230 0.26 -0.6
440,379 + ABIE40_RS02230 0.26 -0.6
440,379 + ABIE40_RS02230 0.26 +0.2
440,379 + ABIE40_RS02230 0.26 +3.2
440,380 - ABIE40_RS02230 0.26 -0.1
440,380 - ABIE40_RS02230 0.26 -0.4
440,381 + ABIE40_RS02230 0.26 -0.4
440,381 + ABIE40_RS02230 0.26 +0.5
440,382 - ABIE40_RS02230 0.26 +0.1
440,382 - ABIE40_RS02230 0.26 +0.6
440,382 - ABIE40_RS02230 0.26 +0.0
440,382 - ABIE40_RS02230 0.26 -0.1
440,382 - ABIE40_RS02230 0.26 -0.2
440,421 + ABIE40_RS02230 0.30 +0.3
440,422 - ABIE40_RS02230 0.30 +0.3
440,672 + ABIE40_RS02230 0.55 +0.6
440,672 + ABIE40_RS02230 0.55 -1.0
440,672 + ABIE40_RS02230 0.55 -1.1
440,672 + ABIE40_RS02230 0.55 -0.7
440,673 - ABIE40_RS02230 0.55 -1.1
440,700 + ABIE40_RS02230 0.58 +0.0
440,700 + ABIE40_RS02230 0.58 +0.3
440,700 + ABIE40_RS02230 0.58 -0.0
440,701 - ABIE40_RS02230 0.58 -1.6
440,701 - ABIE40_RS02230 0.58 +0.6
440,701 - ABIE40_RS02230 0.58 -3.1
440,701 - ABIE40_RS02230 0.58 +1.4
440,713 - ABIE40_RS02230 0.59 +0.9
440,723 + ABIE40_RS02230 0.60 -0.6
440,723 + ABIE40_RS02230 0.60 -0.2
440,723 + ABIE40_RS02230 0.60 +0.1
440,723 + ABIE40_RS02230 0.60 -2.1
440,723 + ABIE40_RS02230 0.60 +0.2
440,724 - ABIE40_RS02230 0.60 +0.8
440,724 - ABIE40_RS02230 0.60 -0.2
440,759 + ABIE40_RS02230 0.63 +0.8
440,759 + ABIE40_RS02230 0.63 -0.9
440,760 - ABIE40_RS02230 0.63 +1.5
440,792 + ABIE40_RS02230 0.67 +2.2
440,793 - ABIE40_RS02230 0.67 -2.6
440,793 - ABIE40_RS02230 0.67 -0.0
440,793 - ABIE40_RS02230 0.67 +1.7
440,798 + ABIE40_RS02230 0.67 +0.2
440,798 + ABIE40_RS02230 0.67 -2.0
440,798 + ABIE40_RS02230 0.67 -0.4
440,799 - ABIE40_RS02230 0.67 -1.2
440,799 - ABIE40_RS02230 0.67 +0.1
440,804 + ABIE40_RS02230 0.68 +0.4
440,804 + ABIE40_RS02230 0.68 -0.2
440,805 - ABIE40_RS02230 0.68 -2.2
440,805 - ABIE40_RS02230 0.68 +1.7
440,805 - ABIE40_RS02230 0.68 +1.4
440,834 + ABIE40_RS02230 0.71 +0.1
440,834 + ABIE40_RS02230 0.71 -2.1
440,834 + ABIE40_RS02230 0.71 +0.7
440,834 + ABIE40_RS02230 0.71 -2.3
440,834 + ABIE40_RS02230 0.71 +1.2
440,834 + ABIE40_RS02230 0.71 -0.6
440,835 - ABIE40_RS02230 0.71 +0.7
440,835 - ABIE40_RS02230 0.71 -1.2
440,835 - ABIE40_RS02230 0.71 +0.2
440,835 - ABIE40_RS02230 0.71 +1.4
440,838 + ABIE40_RS02230 0.71 +0.9
440,840 + ABIE40_RS02230 0.71 -0.2
440,840 + ABIE40_RS02230 0.71 -0.9
440,840 + ABIE40_RS02230 0.71 -0.4
440,840 + ABIE40_RS02230 0.71 +0.3
440,841 - ABIE40_RS02230 0.71 -0.2
440,841 - ABIE40_RS02230 0.71 +0.2
440,841 - ABIE40_RS02230 0.71 -2.5
440,903 + ABIE40_RS02230 0.77 +3.3
440,903 + ABIE40_RS02230 0.77 -1.6
440,903 + ABIE40_RS02230 0.77 -2.8
440,903 + ABIE40_RS02230 0.77 -0.6
440,904 - ABIE40_RS02230 0.78 -0.9
440,904 - ABIE40_RS02230 0.78 -0.1
440,942 + ABIE40_RS02230 0.81 -1.0
440,942 + ABIE40_RS02230 0.81 -0.0
440,942 + ABIE40_RS02230 0.81 -0.8
440,943 - ABIE40_RS02230 0.81 +0.6
441,162 + -1.5
441,162 + +0.2
441,163 - +0.3
441,163 - +0.8
441,163 - +1.2
441,163 - -0.6
441,163 - -1.6
441,164 + -0.6
441,164 + -1.7
441,164 + +0.9
441,164 + +0.9
441,165 - +2.4
441,165 - -0.3
441,165 - -0.7
441,167 + -0.4
441,167 + +0.1
441,167 + -0.6
441,167 + +0.5
441,167 + +0.5
441,167 + +0.5
441,168 - -0.9
441,212 + -0.5
441,356 + ABIE40_RS02235 0.13 -1.6
441,357 - ABIE40_RS02235 0.13 -0.5
441,444 + ABIE40_RS02235 0.18 -1.3
441,536 + ABIE40_RS02235 0.25 +0.3
441,536 + ABIE40_RS02235 0.25 -1.4
441,539 - ABIE40_RS02235 0.25 -0.4
441,542 + ABIE40_RS02235 0.25 -2.6
441,543 - ABIE40_RS02235 0.25 +0.3
441,543 - ABIE40_RS02235 0.25 -0.8
441,543 - ABIE40_RS02235 0.25 -0.8
441,543 - ABIE40_RS02235 0.25 -1.4
441,604 - ABIE40_RS02235 0.29 +0.2
441,674 + ABIE40_RS02235 0.34 -0.3
441,674 + ABIE40_RS02235 0.34 +3.7
441,674 + ABIE40_RS02235 0.34 -3.0
441,674 + ABIE40_RS02235 0.34 -1.0
441,675 - ABIE40_RS02235 0.34 -0.0
441,675 - ABIE40_RS02235 0.34 +0.7
441,675 - ABIE40_RS02235 0.34 -0.1
441,675 - ABIE40_RS02235 0.34 -1.2
441,675 - ABIE40_RS02235 0.34 -1.1
441,675 - ABIE40_RS02235 0.34 +0.2
441,761 + ABIE40_RS02235 0.40 -0.6
441,762 - ABIE40_RS02235 0.40 +0.5
441,762 - ABIE40_RS02235 0.40 +0.4
442,047 - ABIE40_RS02235 0.59 -1.4
442,116 + ABIE40_RS02235 0.63 -0.4
442,116 + ABIE40_RS02235 0.63 -1.4
442,116 + ABIE40_RS02235 0.63 -0.6
442,116 + ABIE40_RS02235 0.63 -0.3
442,116 + ABIE40_RS02235 0.63 -0.6
442,119 - ABIE40_RS02235 0.63 +0.3
442,119 - ABIE40_RS02235 0.63 +0.8
442,119 - ABIE40_RS02235 0.63 -2.0
442,220 + ABIE40_RS02235 0.70 +2.6
442,220 + ABIE40_RS02235 0.70 -0.5
442,221 - ABIE40_RS02235 0.70 -1.8
442,221 - ABIE40_RS02235 0.70 -0.6
442,221 - ABIE40_RS02235 0.70 +1.3
442,305 + ABIE40_RS02235 0.76 -1.1
442,306 - ABIE40_RS02235 0.76 +0.3
442,307 + ABIE40_RS02235 0.76 +0.7
442,307 + ABIE40_RS02235 0.76 -3.0
442,307 + ABIE40_RS02235 0.76 -0.1
442,307 + ABIE40_RS02235 0.76 +1.2
442,307 + ABIE40_RS02235 0.76 +0.6
442,307 + ABIE40_RS02235 0.76 -1.4
442,308 - ABIE40_RS02235 0.76 +0.5
442,308 - ABIE40_RS02235 0.76 +0.7
442,308 - ABIE40_RS02235 0.76 -1.2
442,308 - ABIE40_RS02235 0.76 +0.2
442,308 - ABIE40_RS02235 0.76 -0.5
442,308 - ABIE40_RS02235 0.76 +0.2
442,308 - ABIE40_RS02235 0.76 -1.4
442,308 - ABIE40_RS02235 0.76 -1.1
442,308 - ABIE40_RS02235 0.76 +2.0
442,343 + ABIE40_RS02235 0.78 -0.0
442,343 + ABIE40_RS02235 0.78 -0.2
442,344 - ABIE40_RS02235 0.78 -1.5
442,344 - ABIE40_RS02235 0.78 -1.1
442,344 - ABIE40_RS02235 0.78 -1.4
442,500 - ABIE40_RS02235 0.89 +0.9
442,629 + +0.3
442,630 - +0.1
442,672 - +0.0
442,672 - -0.8
442,672 - -0.8
442,672 - +0.9
442,672 - +0.6
442,672 - -3.6
442,739 - -1.2
442,762 + +0.1
442,762 + +0.1
442,763 - -1.1
442,810 + -0.1
442,813 + -0.4
442,814 - -2.7
442,815 + -0.1
442,815 + -0.8
442,815 + +0.9
442,816 - -1.1
442,816 - -2.0
442,831 + -0.8
442,831 + -0.1
442,831 + +1.2
442,831 + +1.1
442,831 + +0.0
442,831 + -0.1
442,832 - -0.5
442,832 - -2.3
442,911 + -0.6
442,911 + +0.1
442,911 + -1.0
442,911 + +0.1
442,911 + -1.3
442,911 + -1.7
442,911 + -0.5
442,912 - -2.0
442,912 - -0.3
442,930 + -0.3
442,930 + -1.5
442,930 + -0.4
442,930 + +0.3
442,931 - -2.4
442,931 - -2.2
442,931 - -1.8
442,931 - -2.3
442,931 - -1.6
442,939 + -1.1
443,420 - ABIE40_RS02240 0.58 -1.9
443,497 + ABIE40_RS02240 0.67 -1.1
443,498 - ABIE40_RS02240 0.67 -3.3
443,579 - ABIE40_RS02240 0.76 -1.5
443,605 + ABIE40_RS02240 0.79 -0.9
443,606 - ABIE40_RS02240 0.79 -2.3
443,611 + ABIE40_RS02240 0.80 +1.0
443,612 - ABIE40_RS02240 0.80 -1.5

Or see this region's nucleotide sequence