Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00385 and ABIE40_RS00390 are separated by 300 nucleotides ABIE40_RS00390 and ABIE40_RS00395 are separated by 3 nucleotides ABIE40_RS00395 and ABIE40_RS00400 are separated by 122 nucleotides ABIE40_RS00400 and ABIE40_RS00405 are separated by 3 nucleotides
ABIE40_RS00385: ABIE40_RS00385 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA, at 78,267 to 78,773
_RS00385
ABIE40_RS00390: ABIE40_RS00390 - iron response transcriptional regulator IrrA, at 79,074 to 79,493
_RS00390
ABIE40_RS00395: ABIE40_RS00395 - trimeric intracellular cation channel family protein, at 79,497 to 80,132
_RS00395
ABIE40_RS00400: ABIE40_RS00400 - hypothetical protein, at 80,255 to 80,725
_RS00400
ABIE40_RS00405: ABIE40_RS00405 - YdcF family protein, at 80,729 to 81,517
_RS00405
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 78.846 kb on - strand at 78.846 kb on - strand at 78.846 kb on - strand at 78.846 kb on - strand at 78.846 kb on - strand at 78.846 kb on - strand at 78.846 kb on - strand at 78.846 kb on - strand at 78.891 kb on - strand at 78.891 kb on - strand at 78.891 kb on - strand at 78.906 kb on - strand at 78.934 kb on + strand at 78.934 kb on + strand at 78.935 kb on - strand at 78.935 kb on - strand at 78.935 kb on - strand at 78.958 kb on - strand at 78.974 kb on + strand at 78.975 kb on - strand at 78.975 kb on - strand at 78.992 kb on + strand at 78.993 kb on - strand at 79.017 kb on + strand at 79.017 kb on + strand at 79.017 kb on + strand at 79.018 kb on - strand at 79.018 kb on - strand at 79.019 kb on + strand at 79.019 kb on + strand at 79.019 kb on + strand at 79.020 kb on - strand at 79.020 kb on - strand at 79.039 kb on + strand at 79.050 kb on - strand at 79.094 kb on + strand at 79.095 kb on - strand at 79.254 kb on + strand, within ABIE40_RS00390 at 79.255 kb on - strand, within ABIE40_RS00390 at 79.255 kb on - strand, within ABIE40_RS00390 at 79.323 kb on + strand, within ABIE40_RS00390 at 79.323 kb on + strand, within ABIE40_RS00390 at 79.323 kb on + strand, within ABIE40_RS00390 at 79.323 kb on + strand, within ABIE40_RS00390 at 79.324 kb on - strand, within ABIE40_RS00390 at 79.324 kb on - strand, within ABIE40_RS00390 at 79.492 kb on - strand at 79.492 kb on - strand at 79.498 kb on + strand at 79.498 kb on + strand at 79.499 kb on - strand at 79.499 kb on - strand at 79.499 kb on - strand at 79.537 kb on + strand at 79.537 kb on + strand at 79.537 kb on + strand at 79.537 kb on + strand at 79.538 kb on - strand at 79.538 kb on - strand at 79.538 kb on - strand at 79.618 kb on + strand, within ABIE40_RS00395 at 79.618 kb on + strand, within ABIE40_RS00395 at 79.618 kb on + strand, within ABIE40_RS00395 at 79.618 kb on + strand, within ABIE40_RS00395 at 79.618 kb on + strand, within ABIE40_RS00395 at 79.619 kb on - strand, within ABIE40_RS00395 at 79.619 kb on - strand, within ABIE40_RS00395 at 79.682 kb on + strand, within ABIE40_RS00395 at 79.682 kb on + strand, within ABIE40_RS00395 at 79.683 kb on - strand, within ABIE40_RS00395 at 79.683 kb on - strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.684 kb on + strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.685 kb on - strand, within ABIE40_RS00395 at 79.831 kb on + strand, within ABIE40_RS00395 at 79.832 kb on - strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.937 kb on + strand, within ABIE40_RS00395 at 79.938 kb on - strand, within ABIE40_RS00395 at 79.938 kb on - strand, within ABIE40_RS00395 at 79.938 kb on - strand, within ABIE40_RS00395 at 79.939 kb on + strand, within ABIE40_RS00395 at 79.939 kb on + strand, within ABIE40_RS00395 at 79.939 kb on + strand, within ABIE40_RS00395 at 79.939 kb on + strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 79.940 kb on - strand, within ABIE40_RS00395 at 80.010 kb on - strand, within ABIE40_RS00395 at 80.108 kb on - strand at 80.108 kb on - strand at 80.268 kb on + strand at 80.269 kb on - strand at 80.269 kb on - strand at 80.269 kb on - strand at 80.351 kb on + strand, within ABIE40_RS00400 at 80.351 kb on + strand, within ABIE40_RS00400 at 80.351 kb on + strand, within ABIE40_RS00400 at 80.351 kb on + strand, within ABIE40_RS00400 at 80.405 kb on + strand, within ABIE40_RS00400 at 80.405 kb on + strand, within ABIE40_RS00400 at 80.406 kb on - strand, within ABIE40_RS00400 at 80.519 kb on + strand, within ABIE40_RS00400 at 80.519 kb on + strand, within ABIE40_RS00400 at 80.519 kb on + strand, within ABIE40_RS00400 at 80.520 kb on - strand, within ABIE40_RS00400 at 80.520 kb on - strand, within ABIE40_RS00400 at 80.520 kb on - strand, within ABIE40_RS00400 at 80.521 kb on + strand, within ABIE40_RS00400 at 80.521 kb on + strand, within ABIE40_RS00400 at 80.521 kb on + strand, within ABIE40_RS00400 at 80.522 kb on - strand, within ABIE40_RS00400 at 80.522 kb on - strand, within ABIE40_RS00400 at 80.522 kb on - strand, within ABIE40_RS00400 at 80.522 kb on - strand, within ABIE40_RS00400 at 80.522 kb on - strand, within ABIE40_RS00400 at 80.528 kb on + strand, within ABIE40_RS00400 at 80.528 kb on + strand, within ABIE40_RS00400 at 80.528 kb on + strand, within ABIE40_RS00400 at 80.528 kb on + strand, within ABIE40_RS00400 at 80.529 kb on - strand, within ABIE40_RS00400 at 80.529 kb on - strand, within ABIE40_RS00400 at 80.553 kb on - strand, within ABIE40_RS00400 at 80.553 kb on - strand, within ABIE40_RS00400 at 80.553 kb on - strand, within ABIE40_RS00400 at 80.579 kb on + strand, within ABIE40_RS00400 at 80.579 kb on + strand, within ABIE40_RS00400 at 80.579 kb on + strand, within ABIE40_RS00400 at 80.579 kb on + strand, within ABIE40_RS00400 at 80.580 kb on - strand, within ABIE40_RS00400 at 80.580 kb on - strand, within ABIE40_RS00400 at 80.585 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.611 kb on + strand, within ABIE40_RS00400 at 80.612 kb on - strand, within ABIE40_RS00400 at 80.612 kb on - strand, within ABIE40_RS00400 at 80.612 kb on - strand, within ABIE40_RS00400 at 80.612 kb on - strand, within ABIE40_RS00400 at 80.723 kb on + strand at 80.723 kb on + strand at 80.723 kb on + strand at 80.730 kb on + strand at 80.731 kb on - strand at 80.731 kb on - strand at 80.739 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.767 kb on - strand at 80.767 kb on - strand at 80.767 kb on - strand at 80.767 kb on - strand at 80.769 kb on + strand at 80.944 kb on - strand, within ABIE40_RS00405 at 81.001 kb on + strand, within ABIE40_RS00405 at 81.001 kb on + strand, within ABIE40_RS00405 at 81.002 kb on - strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 78,846 - +0.8 78,846 - +0.1 78,846 - +0.8 78,846 - +0.8 78,846 - -0.3 78,846 - -0.5 78,846 - -0.4 78,846 - +0.2 78,891 - -0.5 78,891 - +0.1 78,891 - +0.6 78,906 - +1.1 78,934 + -2.3 78,934 + -0.9 78,935 - -0.4 78,935 - -1.5 78,935 - +0.0 78,958 - -0.2 78,974 + -0.1 78,975 - -0.1 78,975 - -0.3 78,992 + -0.5 78,993 - -2.1 79,017 + -1.4 79,017 + -0.2 79,017 + -1.3 79,018 - +3.6 79,018 - +0.4 79,019 + +1.3 79,019 + -1.4 79,019 + +0.3 79,020 - +0.5 79,020 - -1.3 79,039 + +0.6 79,050 - -1.2 79,094 + -0.3 79,095 - +0.5 79,254 + ABIE40_RS00390 0.43 -2.7 79,255 - ABIE40_RS00390 0.43 +0.3 79,255 - ABIE40_RS00390 0.43 -0.6 79,323 + ABIE40_RS00390 0.59 -1.5 79,323 + ABIE40_RS00390 0.59 +0.1 79,323 + ABIE40_RS00390 0.59 -0.7 79,323 + ABIE40_RS00390 0.59 +0.3 79,324 - ABIE40_RS00390 0.60 -0.5 79,324 - ABIE40_RS00390 0.60 +0.9 79,492 - -0.1 79,492 - -2.3 79,498 + +0.5 79,498 + +1.0 79,499 - -2.1 79,499 - -1.1 79,499 - +0.7 79,537 + +1.8 79,537 + +1.5 79,537 + +0.3 79,537 + -0.3 79,538 - +0.6 79,538 - -1.6 79,538 - +1.0 79,618 + ABIE40_RS00395 0.19 +0.3 79,618 + ABIE40_RS00395 0.19 -0.5 79,618 + ABIE40_RS00395 0.19 -0.2 79,618 + ABIE40_RS00395 0.19 +1.1 79,618 + ABIE40_RS00395 0.19 -0.4 79,619 - ABIE40_RS00395 0.19 -0.2 79,619 - ABIE40_RS00395 0.19 -0.1 79,682 + ABIE40_RS00395 0.29 +0.3 79,682 + ABIE40_RS00395 0.29 +0.3 79,683 - ABIE40_RS00395 0.29 +0.7 79,683 - ABIE40_RS00395 0.29 -0.3 79,684 + ABIE40_RS00395 0.29 +0.8 79,684 + ABIE40_RS00395 0.29 +0.0 79,684 + ABIE40_RS00395 0.29 -1.0 79,684 + ABIE40_RS00395 0.29 -0.7 79,684 + ABIE40_RS00395 0.29 +4.4 79,684 + ABIE40_RS00395 0.29 +0.1 79,684 + ABIE40_RS00395 0.29 -0.2 79,684 + ABIE40_RS00395 0.29 -0.0 79,684 + ABIE40_RS00395 0.29 -0.7 79,684 + ABIE40_RS00395 0.29 -0.3 79,684 + ABIE40_RS00395 0.29 +0.3 79,684 + ABIE40_RS00395 0.29 +0.6 79,685 - ABIE40_RS00395 0.30 -0.1 79,685 - ABIE40_RS00395 0.30 -0.6 79,685 - ABIE40_RS00395 0.30 +1.4 79,685 - ABIE40_RS00395 0.30 +1.0 79,685 - ABIE40_RS00395 0.30 -0.7 79,685 - ABIE40_RS00395 0.30 -0.5 79,685 - ABIE40_RS00395 0.30 +0.4 79,685 - ABIE40_RS00395 0.30 +0.1 79,685 - ABIE40_RS00395 0.30 -1.2 79,685 - ABIE40_RS00395 0.30 -0.6 79,685 - ABIE40_RS00395 0.30 +0.8 79,685 - ABIE40_RS00395 0.30 -0.5 79,685 - ABIE40_RS00395 0.30 +1.8 79,685 - ABIE40_RS00395 0.30 -1.4 79,685 - ABIE40_RS00395 0.30 -0.9 79,831 + ABIE40_RS00395 0.53 +0.1 79,832 - ABIE40_RS00395 0.53 -0.4 79,937 + ABIE40_RS00395 0.69 +1.1 79,937 + ABIE40_RS00395 0.69 -0.3 79,937 + ABIE40_RS00395 0.69 +3.4 79,937 + ABIE40_RS00395 0.69 -1.0 79,937 + ABIE40_RS00395 0.69 -0.2 79,937 + ABIE40_RS00395 0.69 +3.1 79,937 + ABIE40_RS00395 0.69 +0.6 79,937 + ABIE40_RS00395 0.69 +0.7 79,937 + ABIE40_RS00395 0.69 +0.4 79,937 + ABIE40_RS00395 0.69 +0.1 79,938 - ABIE40_RS00395 0.69 +1.5 79,938 - ABIE40_RS00395 0.69 -0.2 79,938 - ABIE40_RS00395 0.69 +1.0 79,939 + ABIE40_RS00395 0.69 -2.0 79,939 + ABIE40_RS00395 0.69 -2.3 79,939 + ABIE40_RS00395 0.69 +2.2 79,939 + ABIE40_RS00395 0.69 +0.1 79,940 - ABIE40_RS00395 0.70 +0.1 79,940 - ABIE40_RS00395 0.70 -0.2 79,940 - ABIE40_RS00395 0.70 +0.7 79,940 - ABIE40_RS00395 0.70 +0.3 79,940 - ABIE40_RS00395 0.70 -0.4 79,940 - ABIE40_RS00395 0.70 +0.2 79,940 - ABIE40_RS00395 0.70 +0.7 79,940 - ABIE40_RS00395 0.70 -0.6 80,010 - ABIE40_RS00395 0.81 -0.6 80,108 - +0.2 80,108 - +1.6 80,268 + -0.5 80,269 - -1.2 80,269 - +0.8 80,269 - +1.5 80,351 + ABIE40_RS00400 0.20 +1.5 80,351 + ABIE40_RS00400 0.20 -1.0 80,351 + ABIE40_RS00400 0.20 -0.2 80,351 + ABIE40_RS00400 0.20 -0.2 80,405 + ABIE40_RS00400 0.32 -0.3 80,405 + ABIE40_RS00400 0.32 -0.7 80,406 - ABIE40_RS00400 0.32 -0.1 80,519 + ABIE40_RS00400 0.56 +0.2 80,519 + ABIE40_RS00400 0.56 +0.4 80,519 + ABIE40_RS00400 0.56 -1.0 80,520 - ABIE40_RS00400 0.56 +0.1 80,520 - ABIE40_RS00400 0.56 -1.0 80,520 - ABIE40_RS00400 0.56 +1.3 80,521 + ABIE40_RS00400 0.56 +0.2 80,521 + ABIE40_RS00400 0.56 +0.5 80,521 + ABIE40_RS00400 0.56 +0.3 80,522 - ABIE40_RS00400 0.57 +0.8 80,522 - ABIE40_RS00400 0.57 +0.3 80,522 - ABIE40_RS00400 0.57 +0.3 80,522 - ABIE40_RS00400 0.57 +0.5 80,522 - ABIE40_RS00400 0.57 +0.8 80,528 + ABIE40_RS00400 0.58 -0.2 80,528 + ABIE40_RS00400 0.58 -0.2 80,528 + ABIE40_RS00400 0.58 +0.2 80,528 + ABIE40_RS00400 0.58 +1.9 80,529 - ABIE40_RS00400 0.58 +0.5 80,529 - ABIE40_RS00400 0.58 +0.1 80,553 - ABIE40_RS00400 0.63 +1.3 80,553 - ABIE40_RS00400 0.63 -0.2 80,553 - ABIE40_RS00400 0.63 -2.8 80,579 + ABIE40_RS00400 0.69 +0.9 80,579 + ABIE40_RS00400 0.69 +0.6 80,579 + ABIE40_RS00400 0.69 -1.4 80,579 + ABIE40_RS00400 0.69 +1.4 80,580 - ABIE40_RS00400 0.69 -1.4 80,580 - ABIE40_RS00400 0.69 -0.2 80,585 + ABIE40_RS00400 0.70 -1.7 80,611 + ABIE40_RS00400 0.76 -0.4 80,611 + ABIE40_RS00400 0.76 +1.2 80,611 + ABIE40_RS00400 0.76 -0.0 80,611 + ABIE40_RS00400 0.76 +1.1 80,611 + ABIE40_RS00400 0.76 +0.3 80,611 + ABIE40_RS00400 0.76 +0.6 80,611 + ABIE40_RS00400 0.76 +0.5 80,611 + ABIE40_RS00400 0.76 +0.7 80,612 - ABIE40_RS00400 0.76 +0.1 80,612 - ABIE40_RS00400 0.76 -1.2 80,612 - ABIE40_RS00400 0.76 +0.1 80,612 - ABIE40_RS00400 0.76 +1.3 80,723 + +1.0 80,723 + +0.4 80,723 + +0.7 80,730 + -0.5 80,731 - +1.0 80,731 - +0.3 80,739 + +0.2 80,766 + +1.3 80,766 + -0.6 80,766 + -0.4 80,766 + +1.3 80,766 + -0.5 80,767 - -0.9 80,767 - +0.7 80,767 - +0.2 80,767 - +0.2 80,769 + +1.8 80,944 - ABIE40_RS00405 0.27 -1.0 81,001 + ABIE40_RS00405 0.34 -2.6 81,001 + ABIE40_RS00405 0.34 +0.3 81,002 - ABIE40_RS00405 0.35 -0.2 81,111 + ABIE40_RS00405 0.48 -0.1 81,111 + ABIE40_RS00405 0.48 -0.2 81,111 + ABIE40_RS00405 0.48 -1.8 81,111 + ABIE40_RS00405 0.48 +1.2 81,111 + ABIE40_RS00405 0.48 -0.9 81,111 + ABIE40_RS00405 0.48 -0.1 81,111 + ABIE40_RS00405 0.48 +0.1 81,111 + ABIE40_RS00405 0.48 -1.2 81,111 + ABIE40_RS00405 0.48 -1.6 81,111 + ABIE40_RS00405 0.48 -0.5 81,111 + ABIE40_RS00405 0.48 -0.1 81,111 + ABIE40_RS00405 0.48 -0.3 81,112 - ABIE40_RS00405 0.49 -1.3 81,112 - ABIE40_RS00405 0.49 +0.1 81,112 - ABIE40_RS00405 0.49 +0.1 81,112 - ABIE40_RS00405 0.49 +0.5 81,112 - ABIE40_RS00405 0.49 +1.0 81,112 - ABIE40_RS00405 0.49 +0.7 81,112 - ABIE40_RS00405 0.49 -0.4 81,112 - ABIE40_RS00405 0.49 -1.1 81,112 - ABIE40_RS00405 0.49 +0.3 81,112 - ABIE40_RS00405 0.49 +0.3 81,112 - ABIE40_RS00405 0.49 +0.2 81,112 - ABIE40_RS00405 0.49 +0.5 81,112 - ABIE40_RS00405 0.49 +1.2 81,112 - ABIE40_RS00405 0.49 -1.0 81,112 - ABIE40_RS00405 0.49 -0.6
Or see this region's nucleotide sequence