Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29430

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29425 and ABID97_RS29430 are separated by 149 nucleotidesABID97_RS29430 and ABID97_RS29435 are separated by 70 nucleotidesABID97_RS29435 and ABID97_RS29440 are separated by 13 nucleotides ABID97_RS29425: ABID97_RS29425 - LysR family transcriptional regulator, at 808,474 to 809,388 _RS29425 ABID97_RS29430: ABID97_RS29430 - GMC family oxidoreductase N-terminal domain-containing protein, at 809,538 to 811,139 _RS29430 ABID97_RS29435: ABID97_RS29435 - SDR family oxidoreductase, at 811,210 to 812,016 _RS29435 ABID97_RS29440: ABID97_RS29440 - MoaF C-terminal domain-containing protein, at 812,030 to 812,830 _RS29440 Position (kb) 809 810 811 812Strain fitness (log2 ratio) -1 0 1at 808.864 kb on + strand, within ABID97_RS29425at 809.201 kb on - strand, within ABID97_RS29425at 809.820 kb on + strand, within ABID97_RS29430at 809.820 kb on + strand, within ABID97_RS29430at 809.844 kb on + strand, within ABID97_RS29430at 810.135 kb on + strand, within ABID97_RS29430at 810.136 kb on - strand, within ABID97_RS29430at 810.919 kb on - strand, within ABID97_RS29430at 811.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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808,864 + ABID97_RS29425 0.43 -0.8
809,201 - ABID97_RS29425 0.79 -0.3
809,820 + ABID97_RS29430 0.18 +0.5
809,820 + ABID97_RS29430 0.18 -0.5
809,844 + ABID97_RS29430 0.19 -0.5
810,135 + ABID97_RS29430 0.37 -0.8
810,136 - ABID97_RS29430 0.37 -0.7
810,919 - ABID97_RS29430 0.86 -1.2
811,179 + +0.2

Or see this region's nucleotide sequence