Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29120 and ABID97_RS29125 are separated by 13 nucleotides ABID97_RS29125 and ABID97_RS29130 are separated by 100 nucleotides ABID97_RS29130 and ABID97_RS29135 overlap by 95 nucleotides ABID97_RS29135 and ABID97_RS29140 are separated by 136 nucleotides ABID97_RS29140 and ABID97_RS29145 are separated by 24 nucleotides
ABID97_RS29120: ABID97_RS29120 - LysR substrate-binding domain-containing protein, at 743,752 to 744,648
_RS29120
ABID97_RS29125: ABID97_RS29125 - flavin reductase family protein, at 744,662 to 744,955
_RS29125
ABID97_RS29130: ABID97_RS29130 - hypothetical protein, at 745,056 to 745,316
_RS29130
ABID97_RS29135: ABID97_RS29135 - acyl-CoA dehydrogenase family protein, at 745,222 to 746,487
_RS29135
ABID97_RS29140: ABID97_RS29140 - MarR family transcriptional regulator, at 746,624 to 747,160
_RS29140
ABID97_RS29145: ABID97_RS29145 - LysR family transcriptional regulator, at 747,185 to 748,138
_RS29145
Position (kb) 745
746
747 Strain fitness (log2 ratio) -1
0
1
2 at 744.272 kb on - strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.362 kb on - strand, within ABID97_RS29120 at 744.401 kb on - strand, within ABID97_RS29120 at 744.478 kb on + strand, within ABID97_RS29120 at 744.574 kb on + strand at 744.574 kb on + strand at 744.575 kb on - strand at 744.575 kb on - strand at 744.575 kb on - strand at 744.625 kb on + strand at 744.626 kb on - strand at 745.204 kb on + strand, within ABID97_RS29130 at 745.205 kb on - strand, within ABID97_RS29130 at 745.205 kb on - strand, within ABID97_RS29130 at 746.249 kb on + strand, within ABID97_RS29135 at 746.590 kb on - strand at 746.751 kb on - strand, within ABID97_RS29140 at 747.056 kb on + strand, within ABID97_RS29140 at 747.236 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 744,272 - ABID97_RS29120 0.58 +0.1 744,361 + ABID97_RS29120 0.68 -0.3 744,361 + ABID97_RS29120 0.68 -0.1 744,361 + ABID97_RS29120 0.68 -0.1 744,362 - ABID97_RS29120 0.68 -0.9 744,401 - ABID97_RS29120 0.72 +1.8 744,478 + ABID97_RS29120 0.81 -0.7 744,574 + -0.5 744,574 + -0.7 744,575 - +0.9 744,575 - -0.0 744,575 - -0.4 744,625 + -0.3 744,626 - -0.3 745,204 + ABID97_RS29130 0.57 +0.8 745,205 - ABID97_RS29130 0.57 -0.5 745,205 - ABID97_RS29130 0.57 +0.3 746,249 + ABID97_RS29135 0.81 -0.9 746,590 - +0.1 746,751 - ABID97_RS29140 0.24 +0.6 747,056 + ABID97_RS29140 0.80 -0.3 747,236 + +0.9
Or see this region's nucleotide sequence