Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28980

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28970 and ABID97_RS28975 are separated by 35 nucleotidesABID97_RS28975 and ABID97_RS28980 are separated by 118 nucleotidesABID97_RS28980 and ABID97_RS28985 are separated by 5 nucleotidesABID97_RS28985 and ABID97_RS28990 are separated by 13 nucleotides ABID97_RS28970: ABID97_RS28970 - AraC family transcriptional regulator, at 713,847 to 714,866 _RS28970 ABID97_RS28975: ABID97_RS28975 - YihY family inner membrane protein, at 714,902 to 715,732 _RS28975 ABID97_RS28980: ABID97_RS28980 - RNA methyltransferase, at 715,851 to 716,876 _RS28980 ABID97_RS28985: ABID97_RS28985 - alpha/beta hydrolase, at 716,882 to 717,634 _RS28985 ABID97_RS28990: ABID97_RS28990 - aspartate 1-decarboxylase, at 717,648 to 718,049 _RS28990 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1at 715.056 kb on + strand, within ABID97_RS28975at 715.056 kb on + strand, within ABID97_RS28975at 715.056 kb on + strand, within ABID97_RS28975at 715.056 kb on + strand, within ABID97_RS28975at 715.056 kb on + strand, within ABID97_RS28975at 715.057 kb on - strand, within ABID97_RS28975at 715.057 kb on - strand, within ABID97_RS28975at 715.176 kb on + strand, within ABID97_RS28975at 715.176 kb on + strand, within ABID97_RS28975at 715.176 kb on + strand, within ABID97_RS28975at 715.176 kb on + strand, within ABID97_RS28975at 715.287 kb on + strand, within ABID97_RS28975at 715.288 kb on - strand, within ABID97_RS28975at 715.288 kb on - strand, within ABID97_RS28975at 715.347 kb on + strand, within ABID97_RS28975at 716.553 kb on + strand, within ABID97_RS28980at 716.553 kb on + strand, within ABID97_RS28980at 716.554 kb on - strand, within ABID97_RS28980at 716.661 kb on + strand, within ABID97_RS28980at 716.662 kb on - strand, within ABID97_RS28980at 716.662 kb on - strand, within ABID97_RS28980at 716.662 kb on - strand, within ABID97_RS28980at 717.462 kb on + strand, within ABID97_RS28985at 717.462 kb on + strand, within ABID97_RS28985at 717.748 kb on + strand, within ABID97_RS28990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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715,056 + ABID97_RS28975 0.19 -0.8
715,056 + ABID97_RS28975 0.19 +0.2
715,056 + ABID97_RS28975 0.19 +0.1
715,056 + ABID97_RS28975 0.19 +0.2
715,056 + ABID97_RS28975 0.19 +0.2
715,057 - ABID97_RS28975 0.19 +0.1
715,057 - ABID97_RS28975 0.19 -0.1
715,176 + ABID97_RS28975 0.33 -0.4
715,176 + ABID97_RS28975 0.33 +0.3
715,176 + ABID97_RS28975 0.33 -1.5
715,176 + ABID97_RS28975 0.33 +0.1
715,287 + ABID97_RS28975 0.46 -0.9
715,288 - ABID97_RS28975 0.46 -0.3
715,288 - ABID97_RS28975 0.46 -0.1
715,347 + ABID97_RS28975 0.54 -0.7
716,553 + ABID97_RS28980 0.68 -2.6
716,553 + ABID97_RS28980 0.68 -0.6
716,554 - ABID97_RS28980 0.69 -2.5
716,661 + ABID97_RS28980 0.79 -0.4
716,662 - ABID97_RS28980 0.79 -1.1
716,662 - ABID97_RS28980 0.79 -1.3
716,662 - ABID97_RS28980 0.79 -0.2
717,462 + ABID97_RS28985 0.77 -1.1
717,462 + ABID97_RS28985 0.77 -0.3
717,748 + ABID97_RS28990 0.25 -1.2

Or see this region's nucleotide sequence