Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28600 and ABID97_RS28605 are separated by 16 nucleotides ABID97_RS28605 and ABID97_RS28610 are separated by 12 nucleotides ABID97_RS28610 and ABID97_RS28615 are separated by 54 nucleotides ABID97_RS28615 and ABID97_RS28620 overlap by 110 nucleotides
ABID97_RS28600: ABID97_RS28600 - aspartate aminotransferase family protein, at 640,098 to 641,450
_RS28600
ABID97_RS28605: ABID97_RS28605 - Lrp/AsnC family transcriptional regulator, at 641,467 to 641,967
_RS28605
ABID97_RS28610: ABID97_RS28610 - tripartite tricarboxylate transporter substrate-binding protein, at 641,980 to 642,939
_RS28610
ABID97_RS28615: ABID97_RS28615 - CoA transferase, at 642,994 to 643,425
_RS28615
ABID97_RS28620: ABID97_RS28620 - CoA transferase, at 643,316 to 644,203
_RS28620
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1 at 641.770 kb on + strand, within ABID97_RS28605 at 641.771 kb on - strand, within ABID97_RS28605 at 641.828 kb on - strand, within ABID97_RS28605 at 642.686 kb on + strand, within ABID97_RS28610 at 642.801 kb on - strand, within ABID97_RS28610 at 642.939 kb on + strand at 642.943 kb on + strand at 642.954 kb on + strand at 643.521 kb on + strand, within ABID97_RS28620 at 643.522 kb on - strand, within ABID97_RS28620 at 643.651 kb on - strand, within ABID97_RS28620 at 643.809 kb on + strand, within ABID97_RS28620 at 643.809 kb on + strand, within ABID97_RS28620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 641,770 + ABID97_RS28605 0.60 +0.5 641,771 - ABID97_RS28605 0.61 -0.2 641,828 - ABID97_RS28605 0.72 -0.3 642,686 + ABID97_RS28610 0.74 -0.2 642,801 - ABID97_RS28610 0.86 -1.0 642,939 + -0.1 642,943 + -0.2 642,954 + +0.1 643,521 + ABID97_RS28620 0.23 -0.3 643,522 - ABID97_RS28620 0.23 -0.5 643,651 - ABID97_RS28620 0.38 +0.2 643,809 + ABID97_RS28620 0.56 -0.1 643,809 + ABID97_RS28620 0.56 +0.8
Or see this region's nucleotide sequence