Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28460

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28455 and ABID97_RS28460 overlap by 4 nucleotidesABID97_RS28460 and ABID97_RS28465 are separated by 20 nucleotides ABID97_RS28455: ABID97_RS28455 - FUSC family protein, at 610,456 to 612,474 _RS28455 ABID97_RS28460: ABID97_RS28460 - DUF1656 domain-containing protein, at 612,471 to 612,683 _RS28460 ABID97_RS28465: ABID97_RS28465 - HlyD family secretion protein, at 612,704 to 613,687 _RS28465 Position (kb) 612 613Strain fitness (log2 ratio) -1 0 1at 611.634 kb on + strand, within ABID97_RS28455at 611.634 kb on + strand, within ABID97_RS28455at 612.652 kb on - strand, within ABID97_RS28460at 612.831 kb on - strand, within ABID97_RS28465

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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611,634 + ABID97_RS28455 0.58 +0.1
611,634 + ABID97_RS28455 0.58 -0.4
612,652 - ABID97_RS28460 0.85 -1.5
612,831 - ABID97_RS28465 0.13 +1.4

Or see this region's nucleotide sequence