Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28165 and ABID97_RS28170 are separated by 70 nucleotides ABID97_RS28170 and ABID97_RS28175 are separated by 125 nucleotides ABID97_RS28175 and ABID97_RS28180 are separated by 224 nucleotides
ABID97_RS28165: ABID97_RS28165 - tannase/feruloyl esterase family alpha/beta hydrolase, at 552,765 to 554,540
_RS28165
ABID97_RS28170: ABID97_RS28170 - hypothetical protein, at 554,611 to 554,880
_RS28170
ABID97_RS28175: ABID97_RS28175 - histidine kinase, at 555,006 to 556,826
_RS28175
ABID97_RS28180: ABID97_RS28180 - oxalate/formate MFS antiporter, at 557,051 to 558,406
_RS28180
Position (kb) 555
556
557 Strain fitness (log2 ratio) -1
0
1 at 554.082 kb on + strand, within ABID97_RS28165 at 554.083 kb on - strand, within ABID97_RS28165 at 554.083 kb on - strand, within ABID97_RS28165 at 554.220 kb on + strand, within ABID97_RS28165 at 554.493 kb on + strand at 554.676 kb on - strand, within ABID97_RS28170 at 557.169 kb on - strand at 557.393 kb on + strand, within ABID97_RS28180 at 557.393 kb on + strand, within ABID97_RS28180 at 557.435 kb on + strand, within ABID97_RS28180 at 557.435 kb on + strand, within ABID97_RS28180 at 557.436 kb on - strand, within ABID97_RS28180 at 557.703 kb on - strand, within ABID97_RS28180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 554,082 + ABID97_RS28165 0.74 +0.3 554,083 - ABID97_RS28165 0.74 -0.0 554,083 - ABID97_RS28165 0.74 -0.2 554,220 + ABID97_RS28165 0.82 -0.0 554,493 + +0.0 554,676 - ABID97_RS28170 0.24 -0.3 557,169 - +1.2 557,393 + ABID97_RS28180 0.25 -1.6 557,393 + ABID97_RS28180 0.25 -0.7 557,435 + ABID97_RS28180 0.28 -0.7 557,435 + ABID97_RS28180 0.28 -0.1 557,436 - ABID97_RS28180 0.28 +0.4 557,703 - ABID97_RS28180 0.48 +0.2
Or see this region's nucleotide sequence