Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28125

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28120 and ABID97_RS28125 are separated by 102 nucleotidesABID97_RS28125 and ABID97_RS28130 are separated by 408 nucleotides ABID97_RS28120: ABID97_RS28120 - hypothetical protein, at 542,197 to 543,318 _RS28120 ABID97_RS28125: ABID97_RS28125 - Crp/Fnr family transcriptional regulator, at 543,421 to 544,101 _RS28125 ABID97_RS28130: ABID97_RS28130 - tannase/feruloyl esterase family alpha/beta hydrolase, at 544,510 to 545,895 _RS28130 Position (kb) 543 544 545Strain fitness (log2 ratio) -1 0 1at 542.809 kb on + strand, within ABID97_RS28120at 542.809 kb on + strand, within ABID97_RS28120at 542.809 kb on + strand, within ABID97_RS28120at 542.810 kb on - strand, within ABID97_RS28120at 542.810 kb on - strand, within ABID97_RS28120at 542.815 kb on + strand, within ABID97_RS28120at 542.816 kb on - strand, within ABID97_RS28120at 543.517 kb on + strand, within ABID97_RS28125at 543.710 kb on - strand, within ABID97_RS28125at 544.006 kb on - strand, within ABID97_RS28125at 544.094 kb on - strandat 544.094 kb on - strandat 544.149 kb on + strandat 544.621 kb on + strandat 544.621 kb on + strandat 544.622 kb on - strandat 544.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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542,809 + ABID97_RS28120 0.55 -0.4
542,809 + ABID97_RS28120 0.55 +0.2
542,809 + ABID97_RS28120 0.55 -0.2
542,810 - ABID97_RS28120 0.55 -0.3
542,810 - ABID97_RS28120 0.55 +0.4
542,815 + ABID97_RS28120 0.55 -0.8
542,816 - ABID97_RS28120 0.55 +0.7
543,517 + ABID97_RS28125 0.14 -1.1
543,710 - ABID97_RS28125 0.42 -0.3
544,006 - ABID97_RS28125 0.86 -1.6
544,094 - -0.0
544,094 - -1.0
544,149 + -0.3
544,621 + +0.0
544,621 + -0.4
544,622 - -0.6
544,622 - -0.1

Or see this region's nucleotide sequence