Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26815 and ABID97_RS26820 are separated by 115 nucleotides ABID97_RS26820 and ABID97_RS26825 are separated by 126 nucleotides ABID97_RS26825 and ABID97_RS26830 are separated by 81 nucleotides ABID97_RS26830 and ABID97_RS26835 are separated by 22 nucleotides
ABID97_RS26815: ABID97_RS26815 - GreA/GreB family elongation factor, at 287,579 to 288,061
_RS26815
ABID97_RS26820: ABID97_RS26820 - DUF1993 domain-containing protein, at 288,177 to 288,686
_RS26820
ABID97_RS26825: ABID97_RS26825 - ankyrin repeat domain-containing protein, at 288,813 to 289,730
_RS26825
ABID97_RS26830: ABID97_RS26830 - hypothetical protein, at 289,812 to 290,081
_RS26830
ABID97_RS26835: ABID97_RS26835 - DUF1629 domain-containing protein, at 290,104 to 290,682
_RS26835
Position (kb) 288
289
290 Strain fitness (log2 ratio) -1
0
1
2
3 at 288.181 kb on + strand at 288.181 kb on + strand at 288.182 kb on - strand at 288.238 kb on + strand, within ABID97_RS26820 at 288.239 kb on - strand, within ABID97_RS26820 at 288.289 kb on + strand, within ABID97_RS26820 at 288.526 kb on - strand, within ABID97_RS26820 at 288.687 kb on - strand at 288.761 kb on - strand at 288.864 kb on + strand at 289.175 kb on - strand, within ABID97_RS26825 at 289.599 kb on - strand, within ABID97_RS26825 at 289.696 kb on + strand at 289.732 kb on + strand at 289.793 kb on + strand at 289.794 kb on - strand at 289.922 kb on - strand, within ABID97_RS26830 at 290.388 kb on - strand, within ABID97_RS26835 at 290.398 kb on + strand, within ABID97_RS26835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 288,181 + -0.1 288,181 + -0.7 288,182 - -0.3 288,238 + ABID97_RS26820 0.12 -0.4 288,239 - ABID97_RS26820 0.12 -0.7 288,289 + ABID97_RS26820 0.22 -1.1 288,526 - ABID97_RS26820 0.68 -0.4 288,687 - -0.3 288,761 - +0.2 288,864 + +0.1 289,175 - ABID97_RS26825 0.39 -1.7 289,599 - ABID97_RS26825 0.86 -0.8 289,696 + +0.2 289,732 + -0.4 289,793 + -0.5 289,794 - -0.4 289,922 - ABID97_RS26830 0.41 -0.2 290,388 - ABID97_RS26835 0.49 +3.2 290,398 + ABID97_RS26835 0.51 -0.2
Or see this region's nucleotide sequence