Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26490 and ABID97_RS26495 overlap by 4 nucleotides ABID97_RS26495 and ABID97_RS26500 are separated by 100 nucleotides ABID97_RS26500 and ABID97_RS26505 are separated by 170 nucleotides
ABID97_RS26490: ABID97_RS26490 - aspartate/glutamate racemase family protein, at 216,608 to 217,300
_RS26490
ABID97_RS26495: ABID97_RS26495 - Lrp/AsnC family transcriptional regulator, at 217,297 to 217,773
_RS26495
ABID97_RS26500: ABID97_RS26500 - saccharopine dehydrogenase C-terminal domain-containing protein, at 217,874 to 219,007
_RS26500
ABID97_RS26505: ABID97_RS26505 - DUF899 domain-containing protein, at 219,178 to 219,960
_RS26505
Position (kb) 217
218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.210 kb on - strand, within ABID97_RS26490 at 217.460 kb on + strand, within ABID97_RS26495 at 217.815 kb on - strand at 217.935 kb on + strand at 218.307 kb on + strand, within ABID97_RS26500 at 218.515 kb on - strand, within ABID97_RS26500 at 218.571 kb on + strand, within ABID97_RS26500 at 218.993 kb on + strand at 219.049 kb on + strand at 219.179 kb on + strand at 219.180 kb on - strand at 219.260 kb on + strand, within ABID97_RS26505 at 219.261 kb on - strand, within ABID97_RS26505 at 219.288 kb on - strand, within ABID97_RS26505 at 219.362 kb on + strand, within ABID97_RS26505 at 219.363 kb on - strand, within ABID97_RS26505 at 219.411 kb on - strand, within ABID97_RS26505 at 219.411 kb on - strand, within ABID97_RS26505 at 219.419 kb on + strand, within ABID97_RS26505 at 219.699 kb on - strand, within ABID97_RS26505 at 219.770 kb on + strand, within ABID97_RS26505
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 217,210 - ABID97_RS26490 0.87 -0.4 217,460 + ABID97_RS26495 0.34 -0.0 217,815 - +0.1 217,935 + +0.1 218,307 + ABID97_RS26500 0.38 -2.0 218,515 - ABID97_RS26500 0.57 -0.6 218,571 + ABID97_RS26500 0.61 -0.6 218,993 + +0.4 219,049 + -1.0 219,179 + -0.4 219,180 - -0.6 219,260 + ABID97_RS26505 0.10 +0.5 219,261 - ABID97_RS26505 0.11 -0.4 219,288 - ABID97_RS26505 0.14 +0.1 219,362 + ABID97_RS26505 0.23 +0.7 219,363 - ABID97_RS26505 0.24 +0.0 219,411 - ABID97_RS26505 0.30 +0.1 219,411 - ABID97_RS26505 0.30 +0.4 219,419 + ABID97_RS26505 0.31 +0.6 219,699 - ABID97_RS26505 0.67 -0.4 219,770 + ABID97_RS26505 0.76 -0.5
Or see this region's nucleotide sequence