Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26020

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26015 and ABID97_RS26020 are separated by 1 nucleotidesABID97_RS26020 and ABID97_RS26025 are separated by 11 nucleotidesABID97_RS26025 and ABID97_RS26030 are separated by 21 nucleotides ABID97_RS26015: ABID97_RS26015 - branched-chain amino acid ABC transporter permease, at 127,340 to 128,210 _RS26015 ABID97_RS26020: ABID97_RS26020 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 128,212 to 130,185 _RS26020 ABID97_RS26025: ABID97_RS26025 - ABC transporter ATP-binding protein, at 130,197 to 130,919 _RS26025 ABID97_RS26030: ABID97_RS26030 - DUF1330 domain-containing protein, at 130,941 to 131,267 _RS26030 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -1 0 1at 127.392 kb on - strandat 127.392 kb on - strandat 127.506 kb on - strand, within ABID97_RS26015at 127.824 kb on - strand, within ABID97_RS26015at 128.018 kb on - strand, within ABID97_RS26015at 128.118 kb on + strand, within ABID97_RS26015at 128.119 kb on - strand, within ABID97_RS26015at 128.294 kb on - strandat 129.241 kb on + strand, within ABID97_RS26020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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127,392 - +0.3
127,392 - -0.1
127,506 - ABID97_RS26015 0.19 +0.1
127,824 - ABID97_RS26015 0.56 -1.0
128,018 - ABID97_RS26015 0.78 -0.7
128,118 + ABID97_RS26015 0.89 +0.3
128,119 - ABID97_RS26015 0.89 -1.0
128,294 - -0.3
129,241 + ABID97_RS26020 0.52 +0.2

Or see this region's nucleotide sequence