Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24865

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24855 and ABID97_RS24860 are separated by 137 nucleotidesABID97_RS24860 and ABID97_RS24865 are separated by 12 nucleotidesABID97_RS24865 and ABID97_RS24870 are separated by 94 nucleotides ABID97_RS24855: ABID97_RS24855 - c-type cytochrome, at 5,149,937 to 5,151,223 _RS24855 ABID97_RS24860: ABID97_RS24860 - hypothetical protein, at 5,151,361 to 5,151,609 _RS24860 ABID97_RS24865: ABID97_RS24865 - UDP-2,3-diacylglucosamine diphosphatase, at 5,151,622 to 5,152,491 _RS24865 ABID97_RS24870: ABID97_RS24870 - CDF family Co(II)/Ni(II) efflux transporter DmeF, at 5,152,586 to 5,153,545 _RS24870 Position (kb) 5151 5152 5153Strain fitness (log2 ratio) -2 -1 0 1at 5150.648 kb on + strand, within ABID97_RS24855at 5150.649 kb on - strand, within ABID97_RS24855at 5150.792 kb on + strand, within ABID97_RS24855at 5150.793 kb on - strand, within ABID97_RS24855at 5150.793 kb on - strand, within ABID97_RS24855at 5150.828 kb on + strand, within ABID97_RS24855at 5150.829 kb on - strand, within ABID97_RS24855at 5150.930 kb on + strand, within ABID97_RS24855at 5150.931 kb on - strand, within ABID97_RS24855at 5151.066 kb on - strand, within ABID97_RS24855at 5151.099 kb on - strandat 5151.415 kb on + strand, within ABID97_RS24860at 5151.416 kb on - strand, within ABID97_RS24860at 5151.547 kb on + strand, within ABID97_RS24860at 5151.548 kb on - strand, within ABID97_RS24860at 5151.548 kb on - strand, within ABID97_RS24860at 5151.568 kb on + strand, within ABID97_RS24860at 5151.569 kb on - strand, within ABID97_RS24860at 5151.762 kb on - strand, within ABID97_RS24865at 5151.875 kb on + strand, within ABID97_RS24865at 5151.875 kb on + strand, within ABID97_RS24865at 5151.876 kb on - strand, within ABID97_RS24865at 5151.876 kb on - strand, within ABID97_RS24865at 5151.876 kb on - strand, within ABID97_RS24865at 5151.876 kb on - strand, within ABID97_RS24865at 5151.876 kb on - strand, within ABID97_RS24865at 5151.909 kb on - strand, within ABID97_RS24865at 5151.909 kb on - strand, within ABID97_RS24865at 5151.926 kb on + strand, within ABID97_RS24865at 5152.140 kb on - strand, within ABID97_RS24865at 5152.140 kb on - strand, within ABID97_RS24865at 5152.247 kb on + strand, within ABID97_RS24865at 5152.710 kb on + strand, within ABID97_RS24870at 5152.710 kb on + strand, within ABID97_RS24870at 5152.998 kb on + strand, within ABID97_RS24870at 5153.167 kb on - strand, within ABID97_RS24870at 5153.310 kb on + strand, within ABID97_RS24870at 5153.329 kb on - strand, within ABID97_RS24870

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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5,150,648 + ABID97_RS24855 0.55 -0.9
5,150,649 - ABID97_RS24855 0.55 -0.0
5,150,792 + ABID97_RS24855 0.66 -0.2
5,150,793 - ABID97_RS24855 0.67 -0.2
5,150,793 - ABID97_RS24855 0.67 -0.1
5,150,828 + ABID97_RS24855 0.69 -0.9
5,150,829 - ABID97_RS24855 0.69 -0.6
5,150,930 + ABID97_RS24855 0.77 -0.3
5,150,931 - ABID97_RS24855 0.77 -0.6
5,151,066 - ABID97_RS24855 0.88 -0.8
5,151,099 - -0.2
5,151,415 + ABID97_RS24860 0.22 +0.2
5,151,416 - ABID97_RS24860 0.22 -0.0
5,151,547 + ABID97_RS24860 0.75 -1.1
5,151,548 - ABID97_RS24860 0.75 +0.9
5,151,548 - ABID97_RS24860 0.75 +0.2
5,151,568 + ABID97_RS24860 0.83 -0.3
5,151,569 - ABID97_RS24860 0.84 -0.0
5,151,762 - ABID97_RS24865 0.16 -0.2
5,151,875 + ABID97_RS24865 0.29 -0.8
5,151,875 + ABID97_RS24865 0.29 -0.2
5,151,876 - ABID97_RS24865 0.29 -0.0
5,151,876 - ABID97_RS24865 0.29 +0.1
5,151,876 - ABID97_RS24865 0.29 -1.9
5,151,876 - ABID97_RS24865 0.29 +0.5
5,151,876 - ABID97_RS24865 0.29 -0.3
5,151,909 - ABID97_RS24865 0.33 +0.4
5,151,909 - ABID97_RS24865 0.33 +0.2
5,151,926 + ABID97_RS24865 0.35 +0.3
5,152,140 - ABID97_RS24865 0.60 -0.1
5,152,140 - ABID97_RS24865 0.60 +0.0
5,152,247 + ABID97_RS24865 0.72 -2.3
5,152,710 + ABID97_RS24870 0.13 -0.8
5,152,710 + ABID97_RS24870 0.13 -0.4
5,152,998 + ABID97_RS24870 0.43 +0.7
5,153,167 - ABID97_RS24870 0.61 -0.0
5,153,310 + ABID97_RS24870 0.75 -0.7
5,153,329 - ABID97_RS24870 0.77 -1.3

Or see this region's nucleotide sequence