Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18595

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18590 and ABID97_RS18595 are separated by 97 nucleotidesABID97_RS18595 and ABID97_RS18600 are separated by 2 nucleotidesABID97_RS18600 and ABID97_RS18605 overlap by 4 nucleotides ABID97_RS18590: ABID97_RS18590 - NAD(P)/FAD-dependent oxidoreductase, at 3,831,083 to 3,832,396 _RS18590 ABID97_RS18595: ABID97_RS18595 - 3-hydroxyacyl-CoA dehydrogenase, at 3,832,494 to 3,834,008 _RS18595 ABID97_RS18600: ABID97_RS18600 - enoyl-CoA hydratase-related protein, at 3,834,011 to 3,834,802 _RS18600 ABID97_RS18605: ABID97_RS18605 - enoyl-CoA hydratase-related protein, at 3,834,799 to 3,835,539 _RS18605 Position (kb) 3832 3833 3834 3835Strain fitness (log2 ratio) -1 0 1at 3833.263 kb on + strand, within ABID97_RS18595at 3834.528 kb on + strand, within ABID97_RS18600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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3,833,263 + ABID97_RS18595 0.51 +0.0
3,834,528 + ABID97_RS18600 0.65 +0.0

Or see this region's nucleotide sequence