Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17770 and ABID97_RS17775 are separated by 487 nucleotides ABID97_RS17775 and ABID97_RS17780 overlap by 1 nucleotides ABID97_RS17780 and ABID97_RS17785 are separated by 1 nucleotides
ABID97_RS17770: ABID97_RS17770 - hypothetical protein, at 3,673,336 to 3,674,214
_RS17770
ABID97_RS17775: ABID97_RS17775 - zonular occludens toxin domain-containing protein, at 3,674,702 to 3,675,892
_RS17775
ABID97_RS17780: ABID97_RS17780 - DUF2523 domain-containing protein, at 3,675,892 to 3,676,191
_RS17780
ABID97_RS17785: ABID97_RS17785 - hypothetical protein, at 3,676,193 to 3,677,554
_RS17785
Position (kb)
3674
3675
3676 Strain fitness (log2 ratio)
-1
0
1
2 at 3673.898 kb on + strand, within ABID97_RS17770 at 3673.969 kb on - strand, within ABID97_RS17770 at 3674.099 kb on + strand, within ABID97_RS17770 at 3674.170 kb on + strand at 3674.198 kb on + strand at 3674.226 kb on - strand at 3674.495 kb on - strand at 3675.277 kb on - strand, within ABID97_RS17775 at 3675.379 kb on - strand, within ABID97_RS17775 at 3675.379 kb on - strand, within ABID97_RS17775 at 3675.379 kb on - strand, within ABID97_RS17775 at 3675.856 kb on + strand at 3675.886 kb on - strand at 3675.893 kb on + strand at 3675.893 kb on + strand at 3675.893 kb on + strand at 3675.894 kb on - strand at 3675.894 kb on - strand at 3675.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 3,673,898 + ABID97_RS17770 0.64 +0.6 3,673,969 - ABID97_RS17770 0.72 +2.5 3,674,099 + ABID97_RS17770 0.87 +0.2 3,674,170 + -0.8 3,674,198 + +0.2 3,674,226 - -0.2 3,674,495 - -0.2 3,675,277 - ABID97_RS17775 0.48 +0.3 3,675,379 - ABID97_RS17775 0.57 +1.1 3,675,379 - ABID97_RS17775 0.57 +0.1 3,675,379 - ABID97_RS17775 0.57 +0.6 3,675,856 + -0.1 3,675,886 - +0.9 3,675,893 + +0.2 3,675,893 + +1.0 3,675,893 + +0.5 3,675,894 - -0.2 3,675,894 - +0.0 3,675,894 - -0.1
Or see this region's nucleotide sequence