Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17775

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17770 and ABID97_RS17775 are separated by 487 nucleotidesABID97_RS17775 and ABID97_RS17780 overlap by 1 nucleotidesABID97_RS17780 and ABID97_RS17785 are separated by 1 nucleotides ABID97_RS17770: ABID97_RS17770 - hypothetical protein, at 3,673,336 to 3,674,214 _RS17770 ABID97_RS17775: ABID97_RS17775 - zonular occludens toxin domain-containing protein, at 3,674,702 to 3,675,892 _RS17775 ABID97_RS17780: ABID97_RS17780 - DUF2523 domain-containing protein, at 3,675,892 to 3,676,191 _RS17780 ABID97_RS17785: ABID97_RS17785 - hypothetical protein, at 3,676,193 to 3,677,554 _RS17785 Position (kb) 3674 3675 3676Strain fitness (log2 ratio) -1 0 1 2at 3673.898 kb on + strand, within ABID97_RS17770at 3673.969 kb on - strand, within ABID97_RS17770at 3674.099 kb on + strand, within ABID97_RS17770at 3674.170 kb on + strandat 3674.198 kb on + strandat 3674.226 kb on - strandat 3674.495 kb on - strandat 3675.277 kb on - strand, within ABID97_RS17775at 3675.379 kb on - strand, within ABID97_RS17775at 3675.379 kb on - strand, within ABID97_RS17775at 3675.379 kb on - strand, within ABID97_RS17775at 3675.856 kb on + strandat 3675.886 kb on - strandat 3675.893 kb on + strandat 3675.893 kb on + strandat 3675.893 kb on + strandat 3675.894 kb on - strandat 3675.894 kb on - strandat 3675.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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3,673,898 + ABID97_RS17770 0.64 +0.6
3,673,969 - ABID97_RS17770 0.72 +2.5
3,674,099 + ABID97_RS17770 0.87 +0.2
3,674,170 + -0.8
3,674,198 + +0.2
3,674,226 - -0.2
3,674,495 - -0.2
3,675,277 - ABID97_RS17775 0.48 +0.3
3,675,379 - ABID97_RS17775 0.57 +1.1
3,675,379 - ABID97_RS17775 0.57 +0.1
3,675,379 - ABID97_RS17775 0.57 +0.6
3,675,856 + -0.1
3,675,886 - +0.9
3,675,893 + +0.2
3,675,893 + +1.0
3,675,893 + +0.5
3,675,894 - -0.2
3,675,894 - +0.0
3,675,894 - -0.1

Or see this region's nucleotide sequence