Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17665

Experiment: D-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS17660 and ABID97_RS17665 overlap by 4 nucleotidesABID97_RS17665 and ABID97_RS17670 are separated by 51 nucleotidesABID97_RS17670 and ABID97_RS17675 overlap by 4 nucleotides ABID97_RS17660: ABID97_RS17660 - ferrochelatase, at 3,648,239 to 3,649,273 _RS17660 ABID97_RS17665: ABID97_RS17665 - DUF1993 domain-containing protein, at 3,649,270 to 3,649,776 _RS17665 ABID97_RS17670: ABID97_RS17670 - alpha/beta hydrolase, at 3,649,828 to 3,650,718 _RS17670 ABID97_RS17675: ABID97_RS17675 - branched-chain amino acid ABC transporter permease, at 3,650,715 to 3,651,782 _RS17675 Position (kb) 3649 3650Strain fitness (log2 ratio) -1 0 1at 3649.271 kb on + strandat 3649.271 kb on + strandat 3649.271 kb on + strandat 3649.286 kb on + strandat 3649.521 kb on - strand, within ABID97_RS17665at 3649.760 kb on + strandat 3649.761 kb on - strandat 3649.761 kb on - strandat 3649.761 kb on - strandat 3649.781 kb on - strandat 3649.781 kb on - strandat 3650.103 kb on - strand, within ABID97_RS17670at 3650.460 kb on - strand, within ABID97_RS17670at 3650.463 kb on - strand, within ABID97_RS17670at 3650.764 kb on + strandat 3650.764 kb on + strandat 3650.764 kb on + strandat 3650.764 kb on + strandat 3650.765 kb on - strandat 3650.767 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
remove
3,649,271 + -0.1
3,649,271 + -1.3
3,649,271 + -0.2
3,649,286 + -0.2
3,649,521 - ABID97_RS17665 0.50 -0.5
3,649,760 + +0.2
3,649,761 - -0.8
3,649,761 - -1.0
3,649,761 - +0.1
3,649,781 - +0.2
3,649,781 - -0.2
3,650,103 - ABID97_RS17670 0.31 +1.7
3,650,460 - ABID97_RS17670 0.71 -1.2
3,650,463 - ABID97_RS17670 0.71 -0.3
3,650,764 + +0.5
3,650,764 + +0.1
3,650,764 + +0.4
3,650,764 + +0.1
3,650,765 - +0.7
3,650,767 + +0.5

Or see this region's nucleotide sequence