Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17660 and ABID97_RS17665 overlap by 4 nucleotides ABID97_RS17665 and ABID97_RS17670 are separated by 51 nucleotides ABID97_RS17670 and ABID97_RS17675 overlap by 4 nucleotides
ABID97_RS17660: ABID97_RS17660 - ferrochelatase, at 3,648,239 to 3,649,273
_RS17660
ABID97_RS17665: ABID97_RS17665 - DUF1993 domain-containing protein, at 3,649,270 to 3,649,776
_RS17665
ABID97_RS17670: ABID97_RS17670 - alpha/beta hydrolase, at 3,649,828 to 3,650,718
_RS17670
ABID97_RS17675: ABID97_RS17675 - branched-chain amino acid ABC transporter permease, at 3,650,715 to 3,651,782
_RS17675
Position (kb)
3649
3650 Strain fitness (log2 ratio)
-1
0
1 at 3649.271 kb on + strand at 3649.271 kb on + strand at 3649.271 kb on + strand at 3649.286 kb on + strand at 3649.521 kb on - strand, within ABID97_RS17665 at 3649.760 kb on + strand at 3649.761 kb on - strand at 3649.761 kb on - strand at 3649.761 kb on - strand at 3649.781 kb on - strand at 3649.781 kb on - strand at 3650.103 kb on - strand, within ABID97_RS17670 at 3650.460 kb on - strand, within ABID97_RS17670 at 3650.463 kb on - strand, within ABID97_RS17670 at 3650.764 kb on + strand at 3650.764 kb on + strand at 3650.764 kb on + strand at 3650.764 kb on + strand at 3650.765 kb on - strand at 3650.767 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 3,649,271 + -0.1 3,649,271 + -1.3 3,649,271 + -0.2 3,649,286 + -0.2 3,649,521 - ABID97_RS17665 0.50 -0.5 3,649,760 + +0.2 3,649,761 - -0.8 3,649,761 - -1.0 3,649,761 - +0.1 3,649,781 - +0.2 3,649,781 - -0.2 3,650,103 - ABID97_RS17670 0.31 +1.7 3,650,460 - ABID97_RS17670 0.71 -1.2 3,650,463 - ABID97_RS17670 0.71 -0.3 3,650,764 + +0.5 3,650,764 + +0.1 3,650,764 + +0.4 3,650,764 + +0.1 3,650,765 - +0.7 3,650,767 + +0.5
Or see this region's nucleotide sequence