Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13460

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13450 and ABID97_RS13455 are separated by 18 nucleotidesABID97_RS13455 and ABID97_RS13460 are separated by 19 nucleotidesABID97_RS13460 and ABID97_RS13465 are separated by 277 nucleotides ABID97_RS13450: ABID97_RS13450 - TetR/AcrR family transcriptional regulator, at 2,800,278 to 2,800,859 _RS13450 ABID97_RS13455: ABID97_RS13455 - ABC transporter substrate-binding protein, at 2,800,878 to 2,801,729 _RS13455 ABID97_RS13460: ABID97_RS13460 - tripartite tricarboxylate transporter substrate binding protein, at 2,801,749 to 2,802,729 _RS13460 ABID97_RS13465: ABID97_RS13465 - VOC family protein, at 2,803,007 to 2,803,957 _RS13465 Position (kb) 2801 2802 2803Strain fitness (log2 ratio) -2 -1 0 1at 2800.915 kb on + strandat 2801.006 kb on + strand, within ABID97_RS13455at 2801.007 kb on - strand, within ABID97_RS13455at 2801.342 kb on - strand, within ABID97_RS13455at 2801.342 kb on - strand, within ABID97_RS13455at 2801.865 kb on - strand, within ABID97_RS13460at 2802.425 kb on + strand, within ABID97_RS13460at 2803.524 kb on - strand, within ABID97_RS13465

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,800,915 + -0.4
2,801,006 + ABID97_RS13455 0.15 +1.0
2,801,007 - ABID97_RS13455 0.15 -2.0
2,801,342 - ABID97_RS13455 0.54 -0.0
2,801,342 - ABID97_RS13455 0.54 +0.2
2,801,865 - ABID97_RS13460 0.12 -0.9
2,802,425 + ABID97_RS13460 0.69 -0.6
2,803,524 - ABID97_RS13465 0.54 -0.2

Or see this region's nucleotide sequence