Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13450 and ABID97_RS13455 are separated by 18 nucleotides ABID97_RS13455 and ABID97_RS13460 are separated by 19 nucleotides ABID97_RS13460 and ABID97_RS13465 are separated by 277 nucleotides
ABID97_RS13450: ABID97_RS13450 - TetR/AcrR family transcriptional regulator, at 2,800,278 to 2,800,859
_RS13450
ABID97_RS13455: ABID97_RS13455 - ABC transporter substrate-binding protein, at 2,800,878 to 2,801,729
_RS13455
ABID97_RS13460: ABID97_RS13460 - tripartite tricarboxylate transporter substrate binding protein, at 2,801,749 to 2,802,729
_RS13460
ABID97_RS13465: ABID97_RS13465 - VOC family protein, at 2,803,007 to 2,803,957
_RS13465
Position (kb)
2801
2802
2803 Strain fitness (log2 ratio)
-2
-1
0
1 at 2800.915 kb on + strand at 2801.006 kb on + strand, within ABID97_RS13455 at 2801.007 kb on - strand, within ABID97_RS13455 at 2801.342 kb on - strand, within ABID97_RS13455 at 2801.342 kb on - strand, within ABID97_RS13455 at 2801.865 kb on - strand, within ABID97_RS13460 at 2802.425 kb on + strand, within ABID97_RS13460 at 2803.524 kb on - strand, within ABID97_RS13465
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 2,800,915 + -0.4 2,801,006 + ABID97_RS13455 0.15 +1.0 2,801,007 - ABID97_RS13455 0.15 -2.0 2,801,342 - ABID97_RS13455 0.54 -0.0 2,801,342 - ABID97_RS13455 0.54 +0.2 2,801,865 - ABID97_RS13460 0.12 -0.9 2,802,425 + ABID97_RS13460 0.69 -0.6 2,803,524 - ABID97_RS13465 0.54 -0.2
Or see this region's nucleotide sequence