Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13440 and ABID97_RS13445 are separated by 40 nucleotides ABID97_RS13445 and ABID97_RS13450 are separated by 284 nucleotides ABID97_RS13450 and ABID97_RS13455 are separated by 18 nucleotides ABID97_RS13455 and ABID97_RS13460 are separated by 19 nucleotides
ABID97_RS13440: ABID97_RS13440 - fumarylacetoacetate hydrolase family protein, at 2,798,349 to 2,799,359
_RS13440
ABID97_RS13445: ABID97_RS13445 - cupin domain-containing protein, at 2,799,400 to 2,799,993
_RS13445
ABID97_RS13450: ABID97_RS13450 - TetR/AcrR family transcriptional regulator, at 2,800,278 to 2,800,859
_RS13450
ABID97_RS13455: ABID97_RS13455 - ABC transporter substrate-binding protein, at 2,800,878 to 2,801,729
_RS13455
ABID97_RS13460: ABID97_RS13460 - tripartite tricarboxylate transporter substrate binding protein, at 2,801,749 to 2,802,729
_RS13460
Position (kb)
2800
2801 Strain fitness (log2 ratio)
-2
-1
0
1 at 2799.424 kb on - strand at 2800.106 kb on + strand at 2800.106 kb on + strand at 2800.107 kb on - strand at 2800.639 kb on + strand, within ABID97_RS13450 at 2800.723 kb on - strand, within ABID97_RS13450 at 2800.915 kb on + strand at 2801.006 kb on + strand, within ABID97_RS13455 at 2801.007 kb on - strand, within ABID97_RS13455 at 2801.342 kb on - strand, within ABID97_RS13455 at 2801.342 kb on - strand, within ABID97_RS13455
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 2,799,424 - -0.6 2,800,106 + +0.7 2,800,106 + -0.2 2,800,107 - +0.5 2,800,639 + ABID97_RS13450 0.62 -2.7 2,800,723 - ABID97_RS13450 0.76 +0.0 2,800,915 + -0.4 2,801,006 + ABID97_RS13455 0.15 +1.0 2,801,007 - ABID97_RS13455 0.15 -2.0 2,801,342 - ABID97_RS13455 0.54 -0.0 2,801,342 - ABID97_RS13455 0.54 +0.2
Or see this region's nucleotide sequence