Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13450

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13440 and ABID97_RS13445 are separated by 40 nucleotidesABID97_RS13445 and ABID97_RS13450 are separated by 284 nucleotidesABID97_RS13450 and ABID97_RS13455 are separated by 18 nucleotidesABID97_RS13455 and ABID97_RS13460 are separated by 19 nucleotides ABID97_RS13440: ABID97_RS13440 - fumarylacetoacetate hydrolase family protein, at 2,798,349 to 2,799,359 _RS13440 ABID97_RS13445: ABID97_RS13445 - cupin domain-containing protein, at 2,799,400 to 2,799,993 _RS13445 ABID97_RS13450: ABID97_RS13450 - TetR/AcrR family transcriptional regulator, at 2,800,278 to 2,800,859 _RS13450 ABID97_RS13455: ABID97_RS13455 - ABC transporter substrate-binding protein, at 2,800,878 to 2,801,729 _RS13455 ABID97_RS13460: ABID97_RS13460 - tripartite tricarboxylate transporter substrate binding protein, at 2,801,749 to 2,802,729 _RS13460 Position (kb) 2800 2801Strain fitness (log2 ratio) -2 -1 0 1at 2799.424 kb on - strandat 2800.106 kb on + strandat 2800.106 kb on + strandat 2800.107 kb on - strandat 2800.639 kb on + strand, within ABID97_RS13450at 2800.723 kb on - strand, within ABID97_RS13450at 2800.915 kb on + strandat 2801.006 kb on + strand, within ABID97_RS13455at 2801.007 kb on - strand, within ABID97_RS13455at 2801.342 kb on - strand, within ABID97_RS13455at 2801.342 kb on - strand, within ABID97_RS13455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,799,424 - -0.6
2,800,106 + +0.7
2,800,106 + -0.2
2,800,107 - +0.5
2,800,639 + ABID97_RS13450 0.62 -2.7
2,800,723 - ABID97_RS13450 0.76 +0.0
2,800,915 + -0.4
2,801,006 + ABID97_RS13455 0.15 +1.0
2,801,007 - ABID97_RS13455 0.15 -2.0
2,801,342 - ABID97_RS13455 0.54 -0.0
2,801,342 - ABID97_RS13455 0.54 +0.2

Or see this region's nucleotide sequence