Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11350

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11345 and ABID97_RS11350 overlap by 4 nucleotidesABID97_RS11350 and ABID97_RS11355 are separated by 19 nucleotides ABID97_RS11345: ABID97_RS11345 - class I adenylate-forming enzyme family protein, at 2,341,031 to 2,342,575 _RS11345 ABID97_RS11350: ABID97_RS11350 - aldehyde dehydrogenase family protein, at 2,342,572 to 2,344,035 _RS11350 ABID97_RS11355: ABID97_RS11355 - acyl-CoA dehydrogenase family protein, at 2,344,055 to 2,345,227 _RS11355 Position (kb) 2342 2343 2344 2345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2342.229 kb on - strand, within ABID97_RS11345at 2342.229 kb on - strand, within ABID97_RS11345at 2342.229 kb on - strand, within ABID97_RS11345at 2342.277 kb on + strand, within ABID97_RS11345at 2342.278 kb on - strand, within ABID97_RS11345at 2342.279 kb on + strand, within ABID97_RS11345at 2342.279 kb on + strand, within ABID97_RS11345at 2342.279 kb on + strand, within ABID97_RS11345at 2342.472 kb on - strandat 2342.923 kb on + strand, within ABID97_RS11350at 2343.423 kb on - strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.890 kb on + strandat 2344.012 kb on + strandat 2344.102 kb on - strandat 2344.531 kb on - strand, within ABID97_RS11355at 2344.583 kb on - strand, within ABID97_RS11355at 2344.732 kb on + strand, within ABID97_RS11355

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,342,229 - ABID97_RS11345 0.78 -0.0
2,342,229 - ABID97_RS11345 0.78 +2.2
2,342,229 - ABID97_RS11345 0.78 -0.8
2,342,277 + ABID97_RS11345 0.81 -0.3
2,342,278 - ABID97_RS11345 0.81 -0.2
2,342,279 + ABID97_RS11345 0.81 -0.1
2,342,279 + ABID97_RS11345 0.81 -0.3
2,342,279 + ABID97_RS11345 0.81 +0.6
2,342,472 - +0.2
2,342,923 + ABID97_RS11350 0.24 +0.1
2,343,423 - ABID97_RS11350 0.58 -0.3
2,343,475 + ABID97_RS11350 0.62 -0.4
2,343,475 + ABID97_RS11350 0.62 -0.4
2,343,475 + ABID97_RS11350 0.62 +0.2
2,343,475 + ABID97_RS11350 0.62 -2.8
2,343,890 + -0.6
2,344,012 + +0.4
2,344,102 - -0.7
2,344,531 - ABID97_RS11355 0.41 +0.5
2,344,583 - ABID97_RS11355 0.45 -0.4
2,344,732 + ABID97_RS11355 0.58 -0.1

Or see this region's nucleotide sequence